Gene : Sobic.004G107800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12741:SF22 - CALLOSE SYNTHASE 8-RELATED Genomic Order:  1121
Name:  ? Sobic.004G107800 Secondary Identifier:  ? PAC:37930804
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6773 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G107800 0.5kb upstream 0.5kb upstream 29928 true Chr04: 10335881-10365808 Sorghum bicolor
Sobic.004G107800 0.5kb upstream 0.5kb upstream 500 false Chr04: 10335881-10336380 Sorghum bicolor
Sobic.004G107800 0.5kb downstream 0.5kb downstream 29928 true Chr04: 10336381-10366308 Sorghum bicolor
Sobic.004G107800 0.5kb downstream 0.5kb downstream 500 false Chr04: 10365809-10366308 Sorghum bicolor
Sobic.004G107800 1.0kb upstream 1.0kb upstream 30428 true Chr04: 10335381-10365808 Sorghum bicolor
Sobic.004G107800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 10335381-10336380 Sorghum bicolor
Sobic.004G107800 1.0kb downstream 1.0kb downstream 30428 true Chr04: 10336381-10366808 Sorghum bicolor
Sobic.004G107800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 10365809-10366808 Sorghum bicolor
Sobic.004G107800 2.0kb upstream 2.0kb upstream 31428 true Chr04: 10334381-10365808 Sorghum bicolor
Sobic.004G107800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 10334381-10336380 Sorghum bicolor
Sobic.004G107800 2.0kb downstream 2.0kb downstream 31428 true Chr04: 10336381-10367808 Sorghum bicolor
Sobic.004G107800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 10365809-10367808 Sorghum bicolor
Sobic.004G107800 5.0kb upstream 5.0kb upstream 34428 true Chr04: 10331381-10365808 Sorghum bicolor
Sobic.004G107800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 10331381-10336380 Sorghum bicolor
Sobic.004G107800 5.0kb downstream 5.0kb downstream 34428 true Chr04: 10336381-10370808 Sorghum bicolor
Sobic.004G107800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 10365809-10370808 Sorghum bicolor
Sobic.004G107800 10.0kb upstream 10.0kb upstream 39428 true Chr04: 10326381-10365808 Sorghum bicolor
Sobic.004G107800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 10326381-10336380 Sorghum bicolor
Sobic.004G107800 10.0kb downstream 10.0kb downstream 39428 true Chr04: 10336381-10375808 Sorghum bicolor
Sobic.004G107800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 10365809-10375808 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191843 5267 Panicoideae View MSA
124589873 5269 Grass View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.063     Low Low
cufflinks 0.273       Low
cufflinks 0.383        
cufflinks 0.359        
cufflinks 3.217       High
cufflinks 0.956        
cufflinks 0.845        
cufflinks 0.638        
cufflinks 1.127        
cufflinks 0.944        
cufflinks 3.186       High
cufflinks 3.403       High
cufflinks 1.731        
cufflinks 2.864        
cufflinks 1.29        
cufflinks 0.149       Low
cufflinks 0.654        
cufflinks 0.782        
cufflinks 0.338        
cufflinks 0.744        
cufflinks 2.056        
cufflinks 2.328        
cufflinks 2.26        
cufflinks 2.395        
cufflinks 0.531        
cufflinks 0.348        
cufflinks 1.999        
cufflinks 0.012     Low Low
cufflinks 0.815        
cufflinks 0.791        

0 Strain