Gene : Sobic.004G101900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11739:SF4 - CITRATE SYNTHASE, PEROXISOMAL Genomic Order:  1058
Name:  ? Sobic.004G101900 Secondary Identifier:  ? PAC:37930874
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYOXYLATE-BYPASS Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-5690 Sorghum bicolor pathologic  
Sbicolor PWY-6549 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G101900 0.5kb upstream 0.5kb upstream 5665 true Chr04: 9416687-9422351 Sorghum bicolor
Sobic.004G101900 0.5kb upstream 0.5kb upstream 500 false Chr04: 9416687-9417186 Sorghum bicolor
Sobic.004G101900 0.5kb downstream 0.5kb downstream 5665 true Chr04: 9417187-9422851 Sorghum bicolor
Sobic.004G101900 0.5kb downstream 0.5kb downstream 500 false Chr04: 9422352-9422851 Sorghum bicolor
Sobic.004G101900 1.0kb upstream 1.0kb upstream 6165 true Chr04: 9416187-9422351 Sorghum bicolor
Sobic.004G101900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 9416187-9417186 Sorghum bicolor
Sobic.004G101900 1.0kb downstream 1.0kb downstream 6165 true Chr04: 9417187-9423351 Sorghum bicolor
Sobic.004G101900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 9422352-9423351 Sorghum bicolor
Sobic.004G101900 2.0kb upstream 2.0kb upstream 7165 true Chr04: 9415187-9422351 Sorghum bicolor
Sobic.004G101900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 9415187-9417186 Sorghum bicolor
Sobic.004G101900 2.0kb downstream 2.0kb downstream 7165 true Chr04: 9417187-9424351 Sorghum bicolor
Sobic.004G101900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 9422352-9424351 Sorghum bicolor
Sobic.004G101900 5.0kb upstream 5.0kb upstream 10165 true Chr04: 9412187-9422351 Sorghum bicolor
Sobic.004G101900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 9412187-9417186 Sorghum bicolor
Sobic.004G101900 5.0kb downstream 5.0kb downstream 10165 true Chr04: 9417187-9427351 Sorghum bicolor
Sobic.004G101900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 9422352-9427351 Sorghum bicolor
Sobic.004G101900 10.0kb upstream 10.0kb upstream 15165 true Chr04: 9407187-9422351 Sorghum bicolor
Sobic.004G101900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 9407187-9417186 Sorghum bicolor
Sobic.004G101900 10.0kb downstream 10.0kb downstream 15165 true Chr04: 9417187-9432351 Sorghum bicolor
Sobic.004G101900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 9422352-9432351 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179324 5267 Panicoideae View MSA
124570333 5269 Grass View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.829     High High
cufflinks 12.402     High Low
cufflinks 19.294     High  
cufflinks 30.708     High  
cufflinks 19.341     High  
cufflinks 21.037     High  
cufflinks 22.633     High  
cufflinks 18.015     High Low
cufflinks 49.33     High High
cufflinks 62.347     High High
cufflinks 31.456     High  
cufflinks 35.225     High  
cufflinks 33.881     High  
cufflinks 46.282     High High
cufflinks 37.176     High  
cufflinks 22.704     High  
cufflinks 24.269     High  
cufflinks 24.286     High  
cufflinks 20.578     High  
cufflinks 26.602     High  
cufflinks 17.79     High Low
cufflinks 34.829     High  
cufflinks 41.307     High  
cufflinks 37.589     High  
cufflinks 19.48     High  
cufflinks 13.181     High Low
cufflinks 40.287     High  
cufflinks 124.489     High High
cufflinks 25.883     High  
cufflinks 38.311     High  

0 Strain