Gene : Sobic.004G097900 S. bicolor v3.1.1
Defline:  (1 of 58) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1016
Name:  ? Sobic.004G097900 Secondary Identifier:  ? PAC:37929274
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G097900 0.5kb upstream 0.5kb upstream 8438 true Chr04: 8713736-8722173 Sorghum bicolor
Sobic.004G097900 0.5kb upstream 0.5kb upstream 500 false Chr04: 8721674-8722173 Sorghum bicolor
Sobic.004G097900 0.5kb downstream 0.5kb downstream 8438 true Chr04: 8713236-8721673 Sorghum bicolor
Sobic.004G097900 0.5kb downstream 0.5kb downstream 500 false Chr04: 8713236-8713735 Sorghum bicolor
Sobic.004G097900 1.0kb upstream 1.0kb upstream 8938 true Chr04: 8713736-8722673 Sorghum bicolor
Sobic.004G097900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 8721674-8722673 Sorghum bicolor
Sobic.004G097900 1.0kb downstream 1.0kb downstream 8938 true Chr04: 8712736-8721673 Sorghum bicolor
Sobic.004G097900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 8712736-8713735 Sorghum bicolor
Sobic.004G097900 2.0kb upstream 2.0kb upstream 9938 true Chr04: 8713736-8723673 Sorghum bicolor
Sobic.004G097900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 8721674-8723673 Sorghum bicolor
Sobic.004G097900 2.0kb downstream 2.0kb downstream 9938 true Chr04: 8711736-8721673 Sorghum bicolor
Sobic.004G097900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 8711736-8713735 Sorghum bicolor
Sobic.004G097900 5.0kb upstream 5.0kb upstream 12938 true Chr04: 8713736-8726673 Sorghum bicolor
Sobic.004G097900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 8721674-8726673 Sorghum bicolor
Sobic.004G097900 5.0kb downstream 5.0kb downstream 12938 true Chr04: 8708736-8721673 Sorghum bicolor
Sobic.004G097900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 8708736-8713735 Sorghum bicolor
Sobic.004G097900 10.0kb upstream 10.0kb upstream 17938 true Chr04: 8713736-8731673 Sorghum bicolor
Sobic.004G097900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 8721674-8731673 Sorghum bicolor
Sobic.004G097900 10.0kb downstream 10.0kb downstream 17938 true Chr04: 8703736-8721673 Sorghum bicolor
Sobic.004G097900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 8703736-8713735 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188078 5267 Panicoideae View MSA
124576662 5269 Grass View MSA
122041926 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.273        
cufflinks 0.045       Low
cufflinks 0.197       Low
cufflinks 0.653        
cufflinks 1.907       High
cufflinks 0.902        
cufflinks 0.685        
cufflinks 0.208       Low
cufflinks 1.255        
cufflinks 1.117        
cufflinks 0.729        
cufflinks 0.914        
cufflinks 0.683        
cufflinks 0.762        
cufflinks 1.124        
cufflinks 0.192       Low
cufflinks 0.812        
cufflinks 0.866        
cufflinks 0.176       Low
cufflinks 0.866        
cufflinks 4.011       High
cufflinks 0.86        
cufflinks 0.935        
cufflinks 0.932        
cufflinks 0.089       Low
cufflinks 0.045       Low
cufflinks 0.865        
cufflinks 1.992       High
cufflinks 0.615        
cufflinks 1.314        

0 Strain