Gene : Sobic.009G025200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11254//PTHR11254:SF327 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // SUBFAMILY NOT NAMED Genomic Order:  253
Name:  ? Sobic.009G025200 Secondary Identifier:  ? PAC:37920118
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G025200 0.5kb upstream 0.5kb upstream 8053 true Chr09: 2242162-2250214 Sorghum bicolor
Sobic.009G025200 0.5kb upstream 0.5kb upstream 500 false Chr09: 2242162-2242661 Sorghum bicolor
Sobic.009G025200 0.5kb downstream 0.5kb downstream 8053 true Chr09: 2242662-2250714 Sorghum bicolor
Sobic.009G025200 0.5kb downstream 0.5kb downstream 500 false Chr09: 2250215-2250714 Sorghum bicolor
Sobic.009G025200 1.0kb upstream 1.0kb upstream 8553 true Chr09: 2241662-2250214 Sorghum bicolor
Sobic.009G025200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2241662-2242661 Sorghum bicolor
Sobic.009G025200 1.0kb downstream 1.0kb downstream 8553 true Chr09: 2242662-2251214 Sorghum bicolor
Sobic.009G025200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2250215-2251214 Sorghum bicolor
Sobic.009G025200 2.0kb upstream 2.0kb upstream 9553 true Chr09: 2240662-2250214 Sorghum bicolor
Sobic.009G025200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2240662-2242661 Sorghum bicolor
Sobic.009G025200 2.0kb downstream 2.0kb downstream 9553 true Chr09: 2242662-2252214 Sorghum bicolor
Sobic.009G025200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2250215-2252214 Sorghum bicolor
Sobic.009G025200 5.0kb upstream 5.0kb upstream 12553 true Chr09: 2237662-2250214 Sorghum bicolor
Sobic.009G025200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2237662-2242661 Sorghum bicolor
Sobic.009G025200 5.0kb downstream 5.0kb downstream 12553 true Chr09: 2242662-2255214 Sorghum bicolor
Sobic.009G025200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2250215-2255214 Sorghum bicolor
Sobic.009G025200 10.0kb upstream 10.0kb upstream 17553 true Chr09: 2232662-2250214 Sorghum bicolor
Sobic.009G025200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2232662-2242661 Sorghum bicolor
Sobic.009G025200 10.0kb downstream 10.0kb downstream 17553 true Chr09: 2242662-2260214 Sorghum bicolor
Sobic.009G025200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2250215-2260214 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188896 5267 Panicoideae View MSA
124574381 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.288        
cufflinks 0.036     Low Low
cufflinks 0.126        
cufflinks 0.132        
cufflinks 0.303        
cufflinks 0.182        
cufflinks 0.134        
cufflinks 0.025     Low Low
cufflinks 0.177        
cufflinks 0.393        
cufflinks 0.38        
cufflinks 0.696       High
cufflinks 0.258        
cufflinks 0.253        
cufflinks 0.534       High
cufflinks 0.091        
cufflinks 0.154        
cufflinks 0.182        
cufflinks 0.07     Low Low
cufflinks 0.189        
cufflinks 0.809       High
cufflinks 0.331        
cufflinks 0.413        
cufflinks 0.42        
cufflinks 0.037     Low Low
cufflinks 0.017     Low Low
cufflinks 0.805       High
cufflinks 0.452        
cufflinks 0.125        
cufflinks 0.654       High

0 Strain