Gene : Sobic.004G149800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Genomic Order:  1561
Name:  ? Sobic.004G149800 Secondary Identifier:  ? PAC:37930082
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G149800 0.5kb upstream 0.5kb upstream 16472 true Chr04: 47076333-47092804 Sorghum bicolor
Sobic.004G149800 0.5kb upstream 0.5kb upstream 500 false Chr04: 47092305-47092804 Sorghum bicolor
Sobic.004G149800 0.5kb downstream 0.5kb downstream 16472 true Chr04: 47075833-47092304 Sorghum bicolor
Sobic.004G149800 0.5kb downstream 0.5kb downstream 500 false Chr04: 47075833-47076332 Sorghum bicolor
Sobic.004G149800 1.0kb upstream 1.0kb upstream 16972 true Chr04: 47076333-47093304 Sorghum bicolor
Sobic.004G149800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47092305-47093304 Sorghum bicolor
Sobic.004G149800 1.0kb downstream 1.0kb downstream 16972 true Chr04: 47075333-47092304 Sorghum bicolor
Sobic.004G149800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47075333-47076332 Sorghum bicolor
Sobic.004G149800 2.0kb upstream 2.0kb upstream 17972 true Chr04: 47076333-47094304 Sorghum bicolor
Sobic.004G149800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47092305-47094304 Sorghum bicolor
Sobic.004G149800 2.0kb downstream 2.0kb downstream 17972 true Chr04: 47074333-47092304 Sorghum bicolor
Sobic.004G149800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47074333-47076332 Sorghum bicolor
Sobic.004G149800 5.0kb upstream 5.0kb upstream 20972 true Chr04: 47076333-47097304 Sorghum bicolor
Sobic.004G149800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47092305-47097304 Sorghum bicolor
Sobic.004G149800 5.0kb downstream 5.0kb downstream 20972 true Chr04: 47071333-47092304 Sorghum bicolor
Sobic.004G149800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47071333-47076332 Sorghum bicolor
Sobic.004G149800 10.0kb upstream 10.0kb upstream 25972 true Chr04: 47076333-47102304 Sorghum bicolor
Sobic.004G149800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47092305-47102304 Sorghum bicolor
Sobic.004G149800 10.0kb downstream 10.0kb downstream 25972 true Chr04: 47066333-47092304 Sorghum bicolor
Sobic.004G149800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47066333-47076332 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192203 5267 Panicoideae View MSA
124590070 5269 Grass View MSA
122044419 5273 Angiosperm View MSA
121348532 5274 Embryophyte View MSA
123428690 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.0       Low
cufflinks 3.544       Low
cufflinks 4.744        
cufflinks 2.939       Low
cufflinks 21.005     High High
cufflinks 4.381       Low
cufflinks 13.012     High  
cufflinks 14.209     High  
cufflinks 4.588        
cufflinks 5.667        
cufflinks 16.443     High  
cufflinks 17.637     High  
cufflinks 6.936        
cufflinks 13.898     High  
cufflinks 10.828        
cufflinks 4.072       Low
cufflinks 11.799     High  
cufflinks 12.375     High  
cufflinks 12.893     High  
cufflinks 10.442        
cufflinks 19.796     High High
cufflinks 10.859        
cufflinks 15.074     High  
cufflinks 13.958     High  
cufflinks 4.2       Low
cufflinks 4.996        
cufflinks 13.342     High  
cufflinks 1.636       Low
cufflinks 18.679     High High
cufflinks 13.135     High  

0 Strain