Gene : Sobic.004G130900 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1356
Name:  ? Sobic.004G130900 Secondary Identifier:  ? PAC:37932726
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G130900 0.5kb upstream 0.5kb upstream 6634 true Chr04: 17426192-17432825 Sorghum bicolor
Sobic.004G130900 0.5kb upstream 0.5kb upstream 500 false Chr04: 17432326-17432825 Sorghum bicolor
Sobic.004G130900 0.5kb downstream 0.5kb downstream 6634 true Chr04: 17425692-17432325 Sorghum bicolor
Sobic.004G130900 0.5kb downstream 0.5kb downstream 500 false Chr04: 17425692-17426191 Sorghum bicolor
Sobic.004G130900 1.0kb upstream 1.0kb upstream 7134 true Chr04: 17426192-17433325 Sorghum bicolor
Sobic.004G130900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 17432326-17433325 Sorghum bicolor
Sobic.004G130900 1.0kb downstream 1.0kb downstream 7134 true Chr04: 17425192-17432325 Sorghum bicolor
Sobic.004G130900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 17425192-17426191 Sorghum bicolor
Sobic.004G130900 2.0kb upstream 2.0kb upstream 8134 true Chr04: 17426192-17434325 Sorghum bicolor
Sobic.004G130900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 17432326-17434325 Sorghum bicolor
Sobic.004G130900 2.0kb downstream 2.0kb downstream 8134 true Chr04: 17424192-17432325 Sorghum bicolor
Sobic.004G130900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 17424192-17426191 Sorghum bicolor
Sobic.004G130900 5.0kb upstream 5.0kb upstream 11134 true Chr04: 17426192-17437325 Sorghum bicolor
Sobic.004G130900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 17432326-17437325 Sorghum bicolor
Sobic.004G130900 5.0kb downstream 5.0kb downstream 11134 true Chr04: 17421192-17432325 Sorghum bicolor
Sobic.004G130900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 17421192-17426191 Sorghum bicolor
Sobic.004G130900 10.0kb upstream 10.0kb upstream 16134 true Chr04: 17426192-17442325 Sorghum bicolor
Sobic.004G130900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 17432326-17442325 Sorghum bicolor
Sobic.004G130900 10.0kb downstream 10.0kb downstream 16134 true Chr04: 17416192-17432325 Sorghum bicolor
Sobic.004G130900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 17416192-17426191 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196006 5267 Panicoideae View MSA
124586417 5269 Grass View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.553       High
cufflinks 4.366       Low
cufflinks 4.292       Low
cufflinks 6.255        
cufflinks 4.692        
cufflinks 6.89        
cufflinks 6.803        
cufflinks 5.369        
cufflinks 7.29        
cufflinks 8.331        
cufflinks 7.326        
cufflinks 8.833        
cufflinks 9.239       High
cufflinks 9.512       High
cufflinks 5.58        
cufflinks 6.127        
cufflinks 7.35        
cufflinks 7.338        
cufflinks 4.776        
cufflinks 8.135        
cufflinks 5.023        
cufflinks 9.288       High
cufflinks 9.184       High
cufflinks 9.651       High
cufflinks 4.446       Low
cufflinks 4.14       Low
cufflinks 5.708        
cufflinks 1.472       Low
cufflinks 7.36        
cufflinks 4.392       Low

0 Strain