Gene : Sobic.004G129400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1339
Name:  ? Sobic.004G129400 Secondary Identifier:  ? PAC:37933775
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-1081 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G129400 0.5kb upstream 0.5kb upstream 3694 true Chr04: 16498847-16502540 Sorghum bicolor
Sobic.004G129400 0.5kb upstream 0.5kb upstream 500 false Chr04: 16502041-16502540 Sorghum bicolor
Sobic.004G129400 0.5kb downstream 0.5kb downstream 3694 true Chr04: 16498347-16502040 Sorghum bicolor
Sobic.004G129400 0.5kb downstream 0.5kb downstream 500 false Chr04: 16498347-16498846 Sorghum bicolor
Sobic.004G129400 1.0kb upstream 1.0kb upstream 4194 true Chr04: 16498847-16503040 Sorghum bicolor
Sobic.004G129400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 16502041-16503040 Sorghum bicolor
Sobic.004G129400 1.0kb downstream 1.0kb downstream 4194 true Chr04: 16497847-16502040 Sorghum bicolor
Sobic.004G129400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 16497847-16498846 Sorghum bicolor
Sobic.004G129400 2.0kb upstream 2.0kb upstream 5194 true Chr04: 16498847-16504040 Sorghum bicolor
Sobic.004G129400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 16502041-16504040 Sorghum bicolor
Sobic.004G129400 2.0kb downstream 2.0kb downstream 5194 true Chr04: 16496847-16502040 Sorghum bicolor
Sobic.004G129400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 16496847-16498846 Sorghum bicolor
Sobic.004G129400 5.0kb upstream 5.0kb upstream 8194 true Chr04: 16498847-16507040 Sorghum bicolor
Sobic.004G129400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 16502041-16507040 Sorghum bicolor
Sobic.004G129400 5.0kb downstream 5.0kb downstream 8194 true Chr04: 16493847-16502040 Sorghum bicolor
Sobic.004G129400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 16493847-16498846 Sorghum bicolor
Sobic.004G129400 10.0kb upstream 10.0kb upstream 13194 true Chr04: 16498847-16512040 Sorghum bicolor
Sobic.004G129400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 16502041-16512040 Sorghum bicolor
Sobic.004G129400 10.0kb downstream 10.0kb downstream 13194 true Chr04: 16488847-16502040 Sorghum bicolor
Sobic.004G129400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 16488847-16498846 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197125 5267 Panicoideae View MSA
124584679 5269 Grass View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low High
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.013     Low  

0 Strain