Gene : Sobic.004G124200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23309//PTHR23309:SF10 - 3-HYDROXYACYL-COA DEHYROGENASE // PEROXISOMAL FATTY ACID BETA-OXIDATION MULTIFUNCTIONAL PROTEIN AIM1 Genomic Order:  1283
Name:  ? Sobic.004G124200 Secondary Identifier:  ? PAC:37933922
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Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ILEUDEG-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5136 Sorghum bicolor pathologic  
Sbicolor PWY-5137 Sorghum bicolor pathologic  
Sbicolor PWY-5138 Sorghum bicolor pathologic  
Sbicolor PWY-561 Sorghum bicolor pathologic  
Sbicolor PWY-6435 Sorghum bicolor pathologic  
Sbicolor PWY-6837 Sorghum bicolor pathologic  
Sbicolor PWY-7036 Sorghum bicolor pathologic  
Sbicolor PWY-735 Sorghum bicolor pathologic  
Sbicolor PWY-7606 Sorghum bicolor pathologic  
Sbicolor PWY-7726 Sorghum bicolor pathologic  
Sbicolor VALDEG-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G124200 0.5kb upstream 0.5kb upstream 8771 true Chr04: 14139070-14147840 Sorghum bicolor
Sobic.004G124200 0.5kb upstream 0.5kb upstream 500 false Chr04: 14139070-14139569 Sorghum bicolor
Sobic.004G124200 0.5kb downstream 0.5kb downstream 8771 true Chr04: 14139570-14148340 Sorghum bicolor
Sobic.004G124200 0.5kb downstream 0.5kb downstream 500 false Chr04: 14147841-14148340 Sorghum bicolor
Sobic.004G124200 1.0kb upstream 1.0kb upstream 9271 true Chr04: 14138570-14147840 Sorghum bicolor
Sobic.004G124200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 14138570-14139569 Sorghum bicolor
Sobic.004G124200 1.0kb downstream 1.0kb downstream 9271 true Chr04: 14139570-14148840 Sorghum bicolor
Sobic.004G124200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 14147841-14148840 Sorghum bicolor
Sobic.004G124200 2.0kb upstream 2.0kb upstream 10271 true Chr04: 14137570-14147840 Sorghum bicolor
Sobic.004G124200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 14137570-14139569 Sorghum bicolor
Sobic.004G124200 2.0kb downstream 2.0kb downstream 10271 true Chr04: 14139570-14149840 Sorghum bicolor
Sobic.004G124200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 14147841-14149840 Sorghum bicolor
Sobic.004G124200 5.0kb upstream 5.0kb upstream 13271 true Chr04: 14134570-14147840 Sorghum bicolor
Sobic.004G124200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 14134570-14139569 Sorghum bicolor
Sobic.004G124200 5.0kb downstream 5.0kb downstream 13271 true Chr04: 14139570-14152840 Sorghum bicolor
Sobic.004G124200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 14147841-14152840 Sorghum bicolor
Sobic.004G124200 10.0kb upstream 10.0kb upstream 18271 true Chr04: 14129570-14147840 Sorghum bicolor
Sobic.004G124200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 14129570-14139569 Sorghum bicolor
Sobic.004G124200 10.0kb downstream 10.0kb downstream 18271 true Chr04: 14139570-14157840 Sorghum bicolor
Sobic.004G124200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 14147841-14157840 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178064 5267 Panicoideae View MSA
124568788 5269 Grass View MSA
122047578 5273 Angiosperm View MSA
121310763 5274 Embryophyte View MSA
123348170 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.771     High  
cufflinks 8.424     High Low
cufflinks 28.419     High  
cufflinks 45.962     High  
cufflinks 18.582     High  
cufflinks 17.51     High  
cufflinks 16.485     High  
cufflinks 13.165     High Low
cufflinks 48.01     High High
cufflinks 53.482     High High
cufflinks 45.282     High  
cufflinks 45.542     High  
cufflinks 28.708     High  
cufflinks 47.154     High High
cufflinks 25.134     High  
cufflinks 23.622     High  
cufflinks 16.181     High  
cufflinks 17.514     High  
cufflinks 21.4     High  
cufflinks 28.865     High  
cufflinks 14.178     High Low
cufflinks 43.227     High  
cufflinks 49.031     High High
cufflinks 43.77     High  
cufflinks 16.362     High  
cufflinks 8.831     High Low
cufflinks 44.511     High  
cufflinks 38.041     High  
cufflinks 19.517     High  
cufflinks 27.05     High  

0 Strain