Gene : Sobic.004G179400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11108//PTHR11108:SF5 - FERROCHELATASE // FERROCHELATASE-2, CHLOROPLASTIC Genomic Order:  1868
Name:  ? Sobic.004G179400 Secondary Identifier:  ? PAC:37932125
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HEME-BIOSYNTHESIS-II Sorghum bicolor pathologic  
Sbicolor PWY-5918 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G179400 0.5kb upstream 0.5kb upstream 6377 true Chr04: 53230602-53236978 Sorghum bicolor
Sobic.004G179400 0.5kb upstream 0.5kb upstream 500 false Chr04: 53236479-53236978 Sorghum bicolor
Sobic.004G179400 0.5kb downstream 0.5kb downstream 6377 true Chr04: 53230102-53236478 Sorghum bicolor
Sobic.004G179400 0.5kb downstream 0.5kb downstream 500 false Chr04: 53230102-53230601 Sorghum bicolor
Sobic.004G179400 1.0kb upstream 1.0kb upstream 6877 true Chr04: 53230602-53237478 Sorghum bicolor
Sobic.004G179400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 53236479-53237478 Sorghum bicolor
Sobic.004G179400 1.0kb downstream 1.0kb downstream 6877 true Chr04: 53229602-53236478 Sorghum bicolor
Sobic.004G179400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 53229602-53230601 Sorghum bicolor
Sobic.004G179400 2.0kb upstream 2.0kb upstream 7877 true Chr04: 53230602-53238478 Sorghum bicolor
Sobic.004G179400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 53236479-53238478 Sorghum bicolor
Sobic.004G179400 2.0kb downstream 2.0kb downstream 7877 true Chr04: 53228602-53236478 Sorghum bicolor
Sobic.004G179400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 53228602-53230601 Sorghum bicolor
Sobic.004G179400 5.0kb upstream 5.0kb upstream 10877 true Chr04: 53230602-53241478 Sorghum bicolor
Sobic.004G179400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 53236479-53241478 Sorghum bicolor
Sobic.004G179400 5.0kb downstream 5.0kb downstream 10877 true Chr04: 53225602-53236478 Sorghum bicolor
Sobic.004G179400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 53225602-53230601 Sorghum bicolor
Sobic.004G179400 10.0kb upstream 10.0kb upstream 15877 true Chr04: 53230602-53246478 Sorghum bicolor
Sobic.004G179400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 53236479-53246478 Sorghum bicolor
Sobic.004G179400 10.0kb downstream 10.0kb downstream 15877 true Chr04: 53220602-53236478 Sorghum bicolor
Sobic.004G179400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 53220602-53230601 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188460 5267 Panicoideae View MSA
124571613 5269 Grass View MSA
122044162 5273 Angiosperm View MSA
121346360 5274 Embryophyte View MSA
123426598 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.295        
cufflinks 3.052       High
cufflinks 3.064       High
cufflinks 1.906        
cufflinks 1.07        
cufflinks 2.544       High
cufflinks 1.609        
cufflinks 1.493        
cufflinks 0.681        
cufflinks 0.71        
cufflinks 0.119       Low
cufflinks 0.153       Low
cufflinks 0.685        
cufflinks 0.079     Low Low
cufflinks 1.596        
cufflinks 4.546       High
cufflinks 1.49        
cufflinks 1.779        
cufflinks 2.565       High
cufflinks 1.836        
cufflinks 1.631        
cufflinks 0.154       Low
cufflinks 0.148       Low
cufflinks 0.15       Low
cufflinks 2.198        
cufflinks 2.041        
cufflinks 0.115       Low
cufflinks 0.241        
cufflinks 1.72        
cufflinks 1.688        

0 Strain