Gene : Sobic.009G062800 S. bicolor v3.1.1
Defline:  (1 of 4) K00615 - transketolase (E2.2.1.1, tktA, tktB) Genomic Order:  642
Name:  ? Sobic.009G062800 Secondary Identifier:  ? PAC:37922563
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CALVIN-PWY Sorghum bicolor pathologic  
Sbicolor NONOXIPENT-PWY Sorghum bicolor pathologic  
Sbicolor PENTOSE-P-PWY Sorghum bicolor pathologic  
Sbicolor PHOTOALL-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5723 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G062800 0.5kb upstream 0.5kb upstream 4064 true Chr09: 6651775-6655838 Sorghum bicolor
Sobic.009G062800 0.5kb upstream 0.5kb upstream 500 false Chr09: 6651775-6652274 Sorghum bicolor
Sobic.009G062800 0.5kb downstream 0.5kb downstream 4064 true Chr09: 6652275-6656338 Sorghum bicolor
Sobic.009G062800 0.5kb downstream 0.5kb downstream 500 false Chr09: 6655839-6656338 Sorghum bicolor
Sobic.009G062800 1.0kb upstream 1.0kb upstream 4564 true Chr09: 6651275-6655838 Sorghum bicolor
Sobic.009G062800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 6651275-6652274 Sorghum bicolor
Sobic.009G062800 1.0kb downstream 1.0kb downstream 4564 true Chr09: 6652275-6656838 Sorghum bicolor
Sobic.009G062800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 6655839-6656838 Sorghum bicolor
Sobic.009G062800 2.0kb upstream 2.0kb upstream 5564 true Chr09: 6650275-6655838 Sorghum bicolor
Sobic.009G062800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 6650275-6652274 Sorghum bicolor
Sobic.009G062800 2.0kb downstream 2.0kb downstream 5564 true Chr09: 6652275-6657838 Sorghum bicolor
Sobic.009G062800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 6655839-6657838 Sorghum bicolor
Sobic.009G062800 5.0kb upstream 5.0kb upstream 8564 true Chr09: 6647275-6655838 Sorghum bicolor
Sobic.009G062800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 6647275-6652274 Sorghum bicolor
Sobic.009G062800 5.0kb downstream 5.0kb downstream 8564 true Chr09: 6652275-6660838 Sorghum bicolor
Sobic.009G062800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 6655839-6660838 Sorghum bicolor
Sobic.009G062800 10.0kb upstream 10.0kb upstream 13564 true Chr09: 6642275-6655838 Sorghum bicolor
Sobic.009G062800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 6642275-6652274 Sorghum bicolor
Sobic.009G062800 10.0kb downstream 10.0kb downstream 13564 true Chr09: 6652275-6665838 Sorghum bicolor
Sobic.009G062800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 6655839-6665838 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027550 5273 Angiosperm View MSA
122192800 5267 Panicoideae View MSA
124466392 5269 Grass View MSA
121350420 5274 Embryophyte View MSA
123423818 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.805        
cufflinks 4.373        
cufflinks 2.973       Low
cufflinks 5.613        
cufflinks 3.987        
cufflinks 3.437       Low
cufflinks 6.923        
cufflinks 7.057        
cufflinks 10.309        
cufflinks 9.771        
cufflinks 10.483        
cufflinks 12.818     High High
cufflinks 9.459        
cufflinks 11.847     High High
cufflinks 3.8        
cufflinks 3.812        
cufflinks 6.367        
cufflinks 7.59        
cufflinks 4.122        
cufflinks 5.859        
cufflinks 2.4       Low
cufflinks 11.642       High
cufflinks 13.92     High High
cufflinks 14.065     High High
cufflinks 2.46       Low
cufflinks 5.442        
cufflinks 15.463     High High
cufflinks 6.088        
cufflinks 6.312        
cufflinks 5.886        

0 Strain