Gene : Sobic.004G177100 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.214 - tRNA (guanine(10)-N(2))-methyltransferase Genomic Order:  1846
Name:  ? Sobic.004G177100 Secondary Identifier:  ? PAC:37932469
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6829 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G177100 0.5kb upstream 0.5kb upstream 3947 true Chr04: 52965662-52969608 Sorghum bicolor
Sobic.004G177100 0.5kb upstream 0.5kb upstream 500 false Chr04: 52969109-52969608 Sorghum bicolor
Sobic.004G177100 0.5kb downstream 0.5kb downstream 3947 true Chr04: 52965162-52969108 Sorghum bicolor
Sobic.004G177100 0.5kb downstream 0.5kb downstream 500 false Chr04: 52965162-52965661 Sorghum bicolor
Sobic.004G177100 1.0kb upstream 1.0kb upstream 4447 true Chr04: 52965662-52970108 Sorghum bicolor
Sobic.004G177100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 52969109-52970108 Sorghum bicolor
Sobic.004G177100 1.0kb downstream 1.0kb downstream 4447 true Chr04: 52964662-52969108 Sorghum bicolor
Sobic.004G177100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 52964662-52965661 Sorghum bicolor
Sobic.004G177100 2.0kb upstream 2.0kb upstream 5447 true Chr04: 52965662-52971108 Sorghum bicolor
Sobic.004G177100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 52969109-52971108 Sorghum bicolor
Sobic.004G177100 2.0kb downstream 2.0kb downstream 5447 true Chr04: 52963662-52969108 Sorghum bicolor
Sobic.004G177100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 52963662-52965661 Sorghum bicolor
Sobic.004G177100 5.0kb upstream 5.0kb upstream 8447 true Chr04: 52965662-52974108 Sorghum bicolor
Sobic.004G177100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 52969109-52974108 Sorghum bicolor
Sobic.004G177100 5.0kb downstream 5.0kb downstream 8447 true Chr04: 52960662-52969108 Sorghum bicolor
Sobic.004G177100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 52960662-52965661 Sorghum bicolor
Sobic.004G177100 10.0kb upstream 10.0kb upstream 13447 true Chr04: 52965662-52979108 Sorghum bicolor
Sobic.004G177100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 52969109-52979108 Sorghum bicolor
Sobic.004G177100 10.0kb downstream 10.0kb downstream 13447 true Chr04: 52955662-52969108 Sorghum bicolor
Sobic.004G177100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 52955662-52965661 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182263 5267 Panicoideae View MSA
124573594 5269 Grass View MSA
122048014 5273 Angiosperm View MSA
121347099 5274 Embryophyte View MSA
123424311 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.772     High High
cufflinks 0.189       Low
cufflinks 0.487       Low
cufflinks 1.878        
cufflinks 4.143        
cufflinks 2.001        
cufflinks 2.407        
cufflinks 0.453       Low
cufflinks 4.769        
cufflinks 4.463        
cufflinks 5.654        
cufflinks 5.251        
cufflinks 1.689        
cufflinks 5.631        
cufflinks 1.423        
cufflinks 0.613       Low
cufflinks 2.706        
cufflinks 2.124        
cufflinks 0.592       Low
cufflinks 2.216        
cufflinks 7.539        
cufflinks 8.167       High
cufflinks 5.855        
cufflinks 7.366        
cufflinks 0.386       Low
cufflinks 0.18       Low
cufflinks 2.613        
cufflinks 7.363        
cufflinks 1.093        
cufflinks 2.788        

0 Strain