Gene : Sobic.004G170200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11999//PTHR11999:SF83 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE // SUBFAMILY NOT NAMED Genomic Order:  1775
Name:  ? Sobic.004G170200 Secondary Identifier:  ? PAC:37929045
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G170200 0.5kb upstream 0.5kb upstream 4220 true Chr04: 52232533-52236752 Sorghum bicolor
Sobic.004G170200 0.5kb upstream 0.5kb upstream 500 false Chr04: 52232533-52233032 Sorghum bicolor
Sobic.004G170200 0.5kb downstream 0.5kb downstream 4220 true Chr04: 52233033-52237252 Sorghum bicolor
Sobic.004G170200 0.5kb downstream 0.5kb downstream 500 false Chr04: 52236753-52237252 Sorghum bicolor
Sobic.004G170200 1.0kb upstream 1.0kb upstream 4720 true Chr04: 52232033-52236752 Sorghum bicolor
Sobic.004G170200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 52232033-52233032 Sorghum bicolor
Sobic.004G170200 1.0kb downstream 1.0kb downstream 4720 true Chr04: 52233033-52237752 Sorghum bicolor
Sobic.004G170200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 52236753-52237752 Sorghum bicolor
Sobic.004G170200 2.0kb upstream 2.0kb upstream 5720 true Chr04: 52231033-52236752 Sorghum bicolor
Sobic.004G170200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 52231033-52233032 Sorghum bicolor
Sobic.004G170200 2.0kb downstream 2.0kb downstream 5720 true Chr04: 52233033-52238752 Sorghum bicolor
Sobic.004G170200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 52236753-52238752 Sorghum bicolor
Sobic.004G170200 5.0kb upstream 5.0kb upstream 8720 true Chr04: 52228033-52236752 Sorghum bicolor
Sobic.004G170200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 52228033-52233032 Sorghum bicolor
Sobic.004G170200 5.0kb downstream 5.0kb downstream 8720 true Chr04: 52233033-52241752 Sorghum bicolor
Sobic.004G170200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 52236753-52241752 Sorghum bicolor
Sobic.004G170200 10.0kb upstream 10.0kb upstream 13720 true Chr04: 52223033-52236752 Sorghum bicolor
Sobic.004G170200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 52223033-52233032 Sorghum bicolor
Sobic.004G170200 10.0kb downstream 10.0kb downstream 13720 true Chr04: 52233033-52246752 Sorghum bicolor
Sobic.004G170200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 52236753-52246752 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183851 5267 Panicoideae View MSA
124579920 5269 Grass View MSA
122050239 5273 Angiosperm View MSA
121349588 5274 Embryophyte View MSA
123424735 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.245       Low
cufflinks 9.854     High Low
cufflinks 9.668     High Low
cufflinks 14.608     High  
cufflinks 22.092     High  
cufflinks 18.975     High  
cufflinks 13.071     High  
cufflinks 33.31     High High
cufflinks 7.513       Low
cufflinks 10.818       Low
cufflinks 15.902     High  
cufflinks 10.568       Low
cufflinks 22.171     High  
cufflinks 11.397        
cufflinks 48.903     High High
cufflinks 22.133     High  
cufflinks 16.746     High  
cufflinks 14.638     High  
cufflinks 15.494     High  
cufflinks 22.028     High  
cufflinks 20.042     High  
cufflinks 32.844     High High
cufflinks 13.959     High  
cufflinks 14.662     High  
cufflinks 14.728     High  
cufflinks 22.294     High  
cufflinks 9.958       Low
cufflinks 19.786     High  
cufflinks 15.945     High  
cufflinks 33.42     High High

0 Strain