Gene : Sobic.004G166500 S. bicolor v3.1.1
Defline:  (1 of 1) 3.5.1.53 - N-carbamoylputrescine amidase Genomic Order:  1735
Name:  ? Sobic.004G166500 Secondary Identifier:  ? PAC:37931222
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor POLYAMINSYN3-PWY Sorghum bicolor pathologic  
Sbicolor PWY-43 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G166500 0.5kb upstream 0.5kb upstream 4968 true Chr04: 51604659-51609626 Sorghum bicolor
Sobic.004G166500 0.5kb upstream 0.5kb upstream 500 false Chr04: 51604659-51605158 Sorghum bicolor
Sobic.004G166500 0.5kb downstream 0.5kb downstream 4968 true Chr04: 51605159-51610126 Sorghum bicolor
Sobic.004G166500 0.5kb downstream 0.5kb downstream 500 false Chr04: 51609627-51610126 Sorghum bicolor
Sobic.004G166500 1.0kb upstream 1.0kb upstream 5468 true Chr04: 51604159-51609626 Sorghum bicolor
Sobic.004G166500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 51604159-51605158 Sorghum bicolor
Sobic.004G166500 1.0kb downstream 1.0kb downstream 5468 true Chr04: 51605159-51610626 Sorghum bicolor
Sobic.004G166500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 51609627-51610626 Sorghum bicolor
Sobic.004G166500 2.0kb upstream 2.0kb upstream 6468 true Chr04: 51603159-51609626 Sorghum bicolor
Sobic.004G166500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 51603159-51605158 Sorghum bicolor
Sobic.004G166500 2.0kb downstream 2.0kb downstream 6468 true Chr04: 51605159-51611626 Sorghum bicolor
Sobic.004G166500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 51609627-51611626 Sorghum bicolor
Sobic.004G166500 5.0kb upstream 5.0kb upstream 9468 true Chr04: 51600159-51609626 Sorghum bicolor
Sobic.004G166500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 51600159-51605158 Sorghum bicolor
Sobic.004G166500 5.0kb downstream 5.0kb downstream 9468 true Chr04: 51605159-51614626 Sorghum bicolor
Sobic.004G166500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 51609627-51614626 Sorghum bicolor
Sobic.004G166500 10.0kb upstream 10.0kb upstream 14468 true Chr04: 51595159-51609626 Sorghum bicolor
Sobic.004G166500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 51595159-51605158 Sorghum bicolor
Sobic.004G166500 10.0kb downstream 10.0kb downstream 14468 true Chr04: 51605159-51619626 Sorghum bicolor
Sobic.004G166500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 51609627-51619626 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190715 5267 Panicoideae View MSA
124580285 5269 Grass View MSA
122048045 5273 Angiosperm View MSA
121345187 5274 Embryophyte View MSA
123425412 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.536     High High
cufflinks 4.739       Low
cufflinks 5.204       Low
cufflinks 6.754       Low
cufflinks 15.134     High  
cufflinks 8.535        
cufflinks 11.712     High  
cufflinks 7.754        
cufflinks 17.14     High  
cufflinks 22.742     High High
cufflinks 18.308     High  
cufflinks 18.347     High  
cufflinks 16.243     High  
cufflinks 25.993     High High
cufflinks 15.024     High  
cufflinks 6.734       Low
cufflinks 10.76        
cufflinks 12.326     High  
cufflinks 6.438       Low
cufflinks 9.756        
cufflinks 17.533     High  
cufflinks 15.836     High  
cufflinks 21.094     High  
cufflinks 21.577     High  
cufflinks 3.775       Low
cufflinks 4.681       Low
cufflinks 13.89     High  
cufflinks 14.997     High  
cufflinks 8.683        
cufflinks 18.546     High  

0 Strain