Gene : Sobic.004G164100 S. bicolor v3.1.1
Defline:  (1 of 164) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1711
Name:  ? Sobic.004G164100 Secondary Identifier:  ? PAC:37932877
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G164100 0.5kb upstream 0.5kb upstream 3409 true Chr04: 51348682-51352090 Sorghum bicolor
Sobic.004G164100 0.5kb upstream 0.5kb upstream 500 false Chr04: 51351591-51352090 Sorghum bicolor
Sobic.004G164100 0.5kb downstream 0.5kb downstream 3409 true Chr04: 51348182-51351590 Sorghum bicolor
Sobic.004G164100 0.5kb downstream 0.5kb downstream 500 false Chr04: 51348182-51348681 Sorghum bicolor
Sobic.004G164100 1.0kb upstream 1.0kb upstream 3909 true Chr04: 51348682-51352590 Sorghum bicolor
Sobic.004G164100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 51351591-51352590 Sorghum bicolor
Sobic.004G164100 1.0kb downstream 1.0kb downstream 3909 true Chr04: 51347682-51351590 Sorghum bicolor
Sobic.004G164100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 51347682-51348681 Sorghum bicolor
Sobic.004G164100 2.0kb upstream 2.0kb upstream 4909 true Chr04: 51348682-51353590 Sorghum bicolor
Sobic.004G164100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 51351591-51353590 Sorghum bicolor
Sobic.004G164100 2.0kb downstream 2.0kb downstream 4909 true Chr04: 51346682-51351590 Sorghum bicolor
Sobic.004G164100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 51346682-51348681 Sorghum bicolor
Sobic.004G164100 5.0kb upstream 5.0kb upstream 7909 true Chr04: 51348682-51356590 Sorghum bicolor
Sobic.004G164100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 51351591-51356590 Sorghum bicolor
Sobic.004G164100 5.0kb downstream 5.0kb downstream 7909 true Chr04: 51343682-51351590 Sorghum bicolor
Sobic.004G164100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 51343682-51348681 Sorghum bicolor
Sobic.004G164100 10.0kb upstream 10.0kb upstream 12909 true Chr04: 51348682-51361590 Sorghum bicolor
Sobic.004G164100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 51351591-51361590 Sorghum bicolor
Sobic.004G164100 10.0kb downstream 10.0kb downstream 12909 true Chr04: 51338682-51351590 Sorghum bicolor
Sobic.004G164100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 51338682-51348681 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184279 5267 Panicoideae View MSA
124573292 5269 Grass View MSA
122049070 5273 Angiosperm View MSA
121311235 5274 Embryophyte View MSA
123348556 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.147        
cufflinks 0.332        
cufflinks 0.427        
cufflinks 0.206        
cufflinks 0.397        
cufflinks 0.603        
cufflinks 1.552       High
cufflinks 2.11       High
cufflinks 0.44        
cufflinks 0.344        
cufflinks 0.018     Low Low
cufflinks 0.008     Low Low
cufflinks 0.166        
cufflinks 0.026     Low Low
cufflinks 0.527        
cufflinks 1.005        
cufflinks 1.858       High
cufflinks 2.355       High
cufflinks 0.93        
cufflinks 1.29        
cufflinks 0.439        
cufflinks 0.016     Low Low
cufflinks 0.005     Low Low
cufflinks 0.018     Low Low
cufflinks 0.199        
cufflinks 0.249        
cufflinks 0.006     Low Low
cufflinks 0.062     Low  
cufflinks 6.201       High
cufflinks 0.846        

0 Strain