Gene : Sobic.004G156400 S. bicolor v3.1.1
Defline:  (1 of 2) K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Genomic Order:  1625
Name:  ? Sobic.004G156400 Secondary Identifier:  ? PAC:37929082
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G156400 0.5kb upstream 0.5kb upstream 13190 true Chr04: 49472905-49486094 Sorghum bicolor
Sobic.004G156400 0.5kb upstream 0.5kb upstream 500 false Chr04: 49472905-49473404 Sorghum bicolor
Sobic.004G156400 0.5kb downstream 0.5kb downstream 13190 true Chr04: 49473405-49486594 Sorghum bicolor
Sobic.004G156400 0.5kb downstream 0.5kb downstream 500 false Chr04: 49486095-49486594 Sorghum bicolor
Sobic.004G156400 1.0kb upstream 1.0kb upstream 13690 true Chr04: 49472405-49486094 Sorghum bicolor
Sobic.004G156400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 49472405-49473404 Sorghum bicolor
Sobic.004G156400 1.0kb downstream 1.0kb downstream 13690 true Chr04: 49473405-49487094 Sorghum bicolor
Sobic.004G156400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 49486095-49487094 Sorghum bicolor
Sobic.004G156400 2.0kb upstream 2.0kb upstream 14690 true Chr04: 49471405-49486094 Sorghum bicolor
Sobic.004G156400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 49471405-49473404 Sorghum bicolor
Sobic.004G156400 2.0kb downstream 2.0kb downstream 14690 true Chr04: 49473405-49488094 Sorghum bicolor
Sobic.004G156400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 49486095-49488094 Sorghum bicolor
Sobic.004G156400 5.0kb upstream 5.0kb upstream 17690 true Chr04: 49468405-49486094 Sorghum bicolor
Sobic.004G156400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 49468405-49473404 Sorghum bicolor
Sobic.004G156400 5.0kb downstream 5.0kb downstream 17690 true Chr04: 49473405-49491094 Sorghum bicolor
Sobic.004G156400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 49486095-49491094 Sorghum bicolor
Sobic.004G156400 10.0kb upstream 10.0kb upstream 22690 true Chr04: 49463405-49486094 Sorghum bicolor
Sobic.004G156400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 49463405-49473404 Sorghum bicolor
Sobic.004G156400 10.0kb downstream 10.0kb downstream 22690 true Chr04: 49473405-49496094 Sorghum bicolor
Sobic.004G156400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 49486095-49496094 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193782 5267 Panicoideae View MSA
124581049 5269 Grass View MSA
122043046 5273 Angiosperm View MSA
121347447 5274 Embryophyte View MSA
123425045 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.803       High
cufflinks 0.63       Low
cufflinks 1.565        
cufflinks 2.342       High
cufflinks 0.963        
cufflinks 3.249       High
cufflinks 1.073        
cufflinks 0.633       Low
cufflinks 2.157       High
cufflinks 1.821        
cufflinks 1.25        
cufflinks 1.781        
cufflinks 1.551        
cufflinks 1.849        
cufflinks 1.456        
cufflinks 1.8        
cufflinks 1.123        
cufflinks 1.074        
cufflinks 1.455        
cufflinks 1.625        
cufflinks 2.053        
cufflinks 1.267        
cufflinks 1.297        
cufflinks 1.478        
cufflinks 0.879        
cufflinks 0.593       Low
cufflinks 1.478        
cufflinks 4.668       High
cufflinks 0.609       Low
cufflinks 1.369        

0 Strain