Gene : Sobic.009G040600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10799:SF640 - NUCLEAR PROTEIN STH1/NPS1 Genomic Order:  415
Name:  ? Sobic.009G040600 Secondary Identifier:  ? PAC:37921546
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G040600 0.5kb upstream 0.5kb upstream 10603 true Chr09: 3898155-3908757 Sorghum bicolor
Sobic.009G040600 0.5kb upstream 0.5kb upstream 500 false Chr09: 3908258-3908757 Sorghum bicolor
Sobic.009G040600 0.5kb downstream 0.5kb downstream 10603 true Chr09: 3897655-3908257 Sorghum bicolor
Sobic.009G040600 0.5kb downstream 0.5kb downstream 500 false Chr09: 3897655-3898154 Sorghum bicolor
Sobic.009G040600 1.0kb upstream 1.0kb upstream 11103 true Chr09: 3898155-3909257 Sorghum bicolor
Sobic.009G040600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3908258-3909257 Sorghum bicolor
Sobic.009G040600 1.0kb downstream 1.0kb downstream 11103 true Chr09: 3897155-3908257 Sorghum bicolor
Sobic.009G040600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3897155-3898154 Sorghum bicolor
Sobic.009G040600 2.0kb upstream 2.0kb upstream 12103 true Chr09: 3898155-3910257 Sorghum bicolor
Sobic.009G040600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3908258-3910257 Sorghum bicolor
Sobic.009G040600 2.0kb downstream 2.0kb downstream 12103 true Chr09: 3896155-3908257 Sorghum bicolor
Sobic.009G040600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3896155-3898154 Sorghum bicolor
Sobic.009G040600 5.0kb upstream 5.0kb upstream 15103 true Chr09: 3898155-3913257 Sorghum bicolor
Sobic.009G040600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3908258-3913257 Sorghum bicolor
Sobic.009G040600 5.0kb downstream 5.0kb downstream 15103 true Chr09: 3893155-3908257 Sorghum bicolor
Sobic.009G040600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3893155-3898154 Sorghum bicolor
Sobic.009G040600 10.0kb upstream 10.0kb upstream 20103 true Chr09: 3898155-3918257 Sorghum bicolor
Sobic.009G040600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3908258-3918257 Sorghum bicolor
Sobic.009G040600 10.0kb downstream 10.0kb downstream 20103 true Chr09: 3888155-3908257 Sorghum bicolor
Sobic.009G040600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3888155-3898154 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041457 5273 Angiosperm View MSA
122194153 5267 Panicoideae View MSA
124569559 5269 Grass View MSA
121344228 5274 Embryophyte View MSA
123426708 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.026        
cufflinks 4.439       Low
cufflinks 4.993       Low
cufflinks 6.394        
cufflinks 10.225        
cufflinks 6.793        
cufflinks 7.853        
cufflinks 5.842        
cufflinks 11.876       High
cufflinks 10.411        
cufflinks 8.315        
cufflinks 12.258     High High
cufflinks 9.789        
cufflinks 9.236        
cufflinks 10.428        
cufflinks 7.478        
cufflinks 8.274        
cufflinks 8.835        
cufflinks 8.802        
cufflinks 9.644        
cufflinks 14.691     High High
cufflinks 6.108        
cufflinks 10.657        
cufflinks 8.924        
cufflinks 5.217       Low
cufflinks 5.308       Low
cufflinks 9.256        
cufflinks 9.94     High  
cufflinks 5.552       Low
cufflinks 12.521     High High

0 Strain