Gene : Sobic.009G130500 S. bicolor v3.1.1
Defline:  (1 of 2) K01814 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) Genomic Order:  1343
Name:  ? Sobic.009G130500 Secondary Identifier:  ? PAC:37920114
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HISTSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G130500 0.5kb upstream 0.5kb upstream 5762 true Chr09: 48378701-48384462 Sorghum bicolor
Sobic.009G130500 0.5kb upstream 0.5kb upstream 500 false Chr09: 48378701-48379200 Sorghum bicolor
Sobic.009G130500 0.5kb downstream 0.5kb downstream 5762 true Chr09: 48379201-48384962 Sorghum bicolor
Sobic.009G130500 0.5kb downstream 0.5kb downstream 500 false Chr09: 48384463-48384962 Sorghum bicolor
Sobic.009G130500 1.0kb upstream 1.0kb upstream 6262 true Chr09: 48378201-48384462 Sorghum bicolor
Sobic.009G130500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 48378201-48379200 Sorghum bicolor
Sobic.009G130500 1.0kb downstream 1.0kb downstream 6262 true Chr09: 48379201-48385462 Sorghum bicolor
Sobic.009G130500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 48384463-48385462 Sorghum bicolor
Sobic.009G130500 2.0kb upstream 2.0kb upstream 7262 true Chr09: 48377201-48384462 Sorghum bicolor
Sobic.009G130500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 48377201-48379200 Sorghum bicolor
Sobic.009G130500 2.0kb downstream 2.0kb downstream 7262 true Chr09: 48379201-48386462 Sorghum bicolor
Sobic.009G130500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 48384463-48386462 Sorghum bicolor
Sobic.009G130500 5.0kb upstream 5.0kb upstream 10262 true Chr09: 48374201-48384462 Sorghum bicolor
Sobic.009G130500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 48374201-48379200 Sorghum bicolor
Sobic.009G130500 5.0kb downstream 5.0kb downstream 10262 true Chr09: 48379201-48389462 Sorghum bicolor
Sobic.009G130500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 48384463-48389462 Sorghum bicolor
Sobic.009G130500 10.0kb upstream 10.0kb upstream 15262 true Chr09: 48369201-48384462 Sorghum bicolor
Sobic.009G130500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 48369201-48379200 Sorghum bicolor
Sobic.009G130500 10.0kb downstream 10.0kb downstream 15262 true Chr09: 48379201-48394462 Sorghum bicolor
Sobic.009G130500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 48384463-48394462 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041281 5273 Angiosperm View MSA
122194677 5267 Panicoideae View MSA
124584289 5269 Grass View MSA
121347171 5274 Embryophyte View MSA
123424389 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.366       High
cufflinks 0.111       Low
cufflinks 0.411        
cufflinks 0.772        
cufflinks 0.838        
cufflinks 1.198       High
cufflinks 0.383        
cufflinks 0.14       Low
cufflinks 1.389       High
cufflinks 1.416       High
cufflinks 0.513        
cufflinks 0.506        
cufflinks 0.865        
cufflinks 0.436        
cufflinks 0.696        
cufflinks 0.339        
cufflinks 0.321        
cufflinks 0.351        
cufflinks 0.188       Low
cufflinks 0.444        
cufflinks 1.485       High
cufflinks 0.853        
cufflinks 0.443        
cufflinks 0.464        
cufflinks 0.203       Low
cufflinks 0.107       Low
cufflinks 0.587        
cufflinks 2.419       High
cufflinks 0.356        
cufflinks 0.895        

0 Strain