Gene : Sobic.004G235100 S. bicolor v3.1.1
Defline:  (1 of 59) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2454
Name:  ? Sobic.004G235100 Secondary Identifier:  ? PAC:37932985
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G235100 0.5kb upstream 0.5kb upstream 3530 true Chr04: 58327330-58330859 Sorghum bicolor
Sobic.004G235100 0.5kb upstream 0.5kb upstream 500 false Chr04: 58330360-58330859 Sorghum bicolor
Sobic.004G235100 0.5kb downstream 0.5kb downstream 3530 true Chr04: 58326830-58330359 Sorghum bicolor
Sobic.004G235100 0.5kb downstream 0.5kb downstream 500 false Chr04: 58326830-58327329 Sorghum bicolor
Sobic.004G235100 1.0kb upstream 1.0kb upstream 4030 true Chr04: 58327330-58331359 Sorghum bicolor
Sobic.004G235100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 58330360-58331359 Sorghum bicolor
Sobic.004G235100 1.0kb downstream 1.0kb downstream 4030 true Chr04: 58326330-58330359 Sorghum bicolor
Sobic.004G235100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 58326330-58327329 Sorghum bicolor
Sobic.004G235100 2.0kb upstream 2.0kb upstream 5030 true Chr04: 58327330-58332359 Sorghum bicolor
Sobic.004G235100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 58330360-58332359 Sorghum bicolor
Sobic.004G235100 2.0kb downstream 2.0kb downstream 5030 true Chr04: 58325330-58330359 Sorghum bicolor
Sobic.004G235100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 58325330-58327329 Sorghum bicolor
Sobic.004G235100 5.0kb upstream 5.0kb upstream 8030 true Chr04: 58327330-58335359 Sorghum bicolor
Sobic.004G235100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 58330360-58335359 Sorghum bicolor
Sobic.004G235100 5.0kb downstream 5.0kb downstream 8030 true Chr04: 58322330-58330359 Sorghum bicolor
Sobic.004G235100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 58322330-58327329 Sorghum bicolor
Sobic.004G235100 10.0kb upstream 10.0kb upstream 13030 true Chr04: 58327330-58340359 Sorghum bicolor
Sobic.004G235100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 58330360-58340359 Sorghum bicolor
Sobic.004G235100 10.0kb downstream 10.0kb downstream 13030 true Chr04: 58317330-58330359 Sorghum bicolor
Sobic.004G235100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 58317330-58327329 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181088 5267 Panicoideae View MSA
124572829 5269 Grass View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.561       Low
cufflinks 1.01        
cufflinks 2.437        
cufflinks 2.337        
cufflinks 3.615        
cufflinks 5.874        
cufflinks 10.135       High
cufflinks 6.447       High
cufflinks 1.882        
cufflinks 1.921        
cufflinks 0.614       Low
cufflinks 0.772        
cufflinks 2.431        
cufflinks 0.531       Low
cufflinks 3.27        
cufflinks 2.991        
cufflinks 11.204       High
cufflinks 12.877     High High
cufflinks 2.266        
cufflinks 5.889        
cufflinks 8.622       High
cufflinks 0.617       Low
cufflinks 0.603       Low
cufflinks 0.649       Low
cufflinks 1.467        
cufflinks 1.011        
cufflinks 0.453       Low
cufflinks 0.322       Low
cufflinks 23.628     High High
cufflinks 4.671        

0 Strain