Gene : Sobic.009G138300 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR22600//PTHR22600:SF18 - BETA-HEXOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  1422
Name:  ? Sobic.009G138300 Secondary Identifier:  ? PAC:37920312
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6902 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G138300 0.5kb upstream 0.5kb upstream 5995 true Chr09: 49529292-49535286 Sorghum bicolor
Sobic.009G138300 0.5kb upstream 0.5kb upstream 500 false Chr09: 49529292-49529791 Sorghum bicolor
Sobic.009G138300 0.5kb downstream 0.5kb downstream 5995 true Chr09: 49529792-49535786 Sorghum bicolor
Sobic.009G138300 0.5kb downstream 0.5kb downstream 500 false Chr09: 49535287-49535786 Sorghum bicolor
Sobic.009G138300 1.0kb upstream 1.0kb upstream 6495 true Chr09: 49528792-49535286 Sorghum bicolor
Sobic.009G138300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 49528792-49529791 Sorghum bicolor
Sobic.009G138300 1.0kb downstream 1.0kb downstream 6495 true Chr09: 49529792-49536286 Sorghum bicolor
Sobic.009G138300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 49535287-49536286 Sorghum bicolor
Sobic.009G138300 2.0kb upstream 2.0kb upstream 7495 true Chr09: 49527792-49535286 Sorghum bicolor
Sobic.009G138300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 49527792-49529791 Sorghum bicolor
Sobic.009G138300 2.0kb downstream 2.0kb downstream 7495 true Chr09: 49529792-49537286 Sorghum bicolor
Sobic.009G138300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 49535287-49537286 Sorghum bicolor
Sobic.009G138300 5.0kb upstream 5.0kb upstream 10495 true Chr09: 49524792-49535286 Sorghum bicolor
Sobic.009G138300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 49524792-49529791 Sorghum bicolor
Sobic.009G138300 5.0kb downstream 5.0kb downstream 10495 true Chr09: 49529792-49540286 Sorghum bicolor
Sobic.009G138300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 49535287-49540286 Sorghum bicolor
Sobic.009G138300 10.0kb upstream 10.0kb upstream 15495 true Chr09: 49519792-49535286 Sorghum bicolor
Sobic.009G138300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 49519792-49529791 Sorghum bicolor
Sobic.009G138300 10.0kb downstream 10.0kb downstream 15495 true Chr09: 49529792-49545286 Sorghum bicolor
Sobic.009G138300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 49535287-49545286 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178301 5267 Panicoideae View MSA
124576721 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.443        
cufflinks 0.077       Low
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.026        
cufflinks 0.061     Low Low
cufflinks 3.507        
cufflinks 2.534        
cufflinks 0.199        
cufflinks 0.585        
cufflinks 4.135        
cufflinks 4.699        
cufflinks 1.12        
cufflinks 9.317        
cufflinks 11.822        
cufflinks 0.006     Low Low
cufflinks 4.006        
cufflinks 3.909        
cufflinks 0.169        
cufflinks 3.783        
cufflinks 8.231        
cufflinks 8.926        
cufflinks 7.893        
cufflinks 7.544        
cufflinks 0.006     Low Low
cufflinks 0.116       Low
cufflinks 4.341        
cufflinks 0.28        
cufflinks 8.064        
cufflinks 14.993     High  

0 Strain