Gene : Sobic.004G268100 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  2805
Name:  ? Sobic.004G268100 Secondary Identifier:  ? PAC:37933009
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARGSYNBSUB-PWY Sorghum bicolor pathologic  
Sbicolor ARGSYN-PWY Sorghum bicolor pathologic  
Sbicolor CITRULBIO-PWY Sorghum bicolor pathologic  
Sbicolor CITRULLINE-DEG-PWY Sorghum bicolor pathologic  
Sbicolor PWY-4984 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G268100 0.5kb upstream 0.5kb upstream 3929 true Chr04: 61207964-61211892 Sorghum bicolor
Sobic.004G268100 0.5kb upstream 0.5kb upstream 500 false Chr04: 61211393-61211892 Sorghum bicolor
Sobic.004G268100 0.5kb downstream 0.5kb downstream 3929 true Chr04: 61207464-61211392 Sorghum bicolor
Sobic.004G268100 0.5kb downstream 0.5kb downstream 500 false Chr04: 61207464-61207963 Sorghum bicolor
Sobic.004G268100 1.0kb upstream 1.0kb upstream 4429 true Chr04: 61207964-61212392 Sorghum bicolor
Sobic.004G268100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 61211393-61212392 Sorghum bicolor
Sobic.004G268100 1.0kb downstream 1.0kb downstream 4429 true Chr04: 61206964-61211392 Sorghum bicolor
Sobic.004G268100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 61206964-61207963 Sorghum bicolor
Sobic.004G268100 2.0kb upstream 2.0kb upstream 5429 true Chr04: 61207964-61213392 Sorghum bicolor
Sobic.004G268100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 61211393-61213392 Sorghum bicolor
Sobic.004G268100 2.0kb downstream 2.0kb downstream 5429 true Chr04: 61205964-61211392 Sorghum bicolor
Sobic.004G268100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 61205964-61207963 Sorghum bicolor
Sobic.004G268100 5.0kb upstream 5.0kb upstream 8429 true Chr04: 61207964-61216392 Sorghum bicolor
Sobic.004G268100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 61211393-61216392 Sorghum bicolor
Sobic.004G268100 5.0kb downstream 5.0kb downstream 8429 true Chr04: 61202964-61211392 Sorghum bicolor
Sobic.004G268100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 61202964-61207963 Sorghum bicolor
Sobic.004G268100 10.0kb upstream 10.0kb upstream 13429 true Chr04: 61207964-61221392 Sorghum bicolor
Sobic.004G268100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 61211393-61221392 Sorghum bicolor
Sobic.004G268100 10.0kb downstream 10.0kb downstream 13429 true Chr04: 61197964-61211392 Sorghum bicolor
Sobic.004G268100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 61197964-61207963 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175374 5267 Panicoideae View MSA
124573214 5269 Grass View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.505     High High
cufflinks 6.12       Low
cufflinks 19.568     High  
cufflinks 31.648     High High
cufflinks 18.727     High  
cufflinks 20.971     High  
cufflinks 20.239     High  
cufflinks 14.522     High  
cufflinks 21.764     High  
cufflinks 22.603     High  
cufflinks 19.869     High  
cufflinks 17.353     High  
cufflinks 14.717     High  
cufflinks 21.711     High  
cufflinks 18.994     High  
cufflinks 13.415     High  
cufflinks 21.777     High  
cufflinks 25.468     High  
cufflinks 10.584       Low
cufflinks 17.118     High  
cufflinks 20.258     High  
cufflinks 25.047     High  
cufflinks 23.755     High  
cufflinks 23.499     High  
cufflinks 7.463       Low
cufflinks 4.808       Low
cufflinks 19.741     High  
cufflinks 18.7     High  
cufflinks 38.101     High High
cufflinks 28.492     High High

0 Strain