Gene : Sobic.009G098100 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  1008
Name:  ? Sobic.009G098100 Secondary Identifier:  ? PAC:37920578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G098100 0.5kb upstream 0.5kb upstream 5280 true Chr09: 36078681-36083960 Sorghum bicolor
Sobic.009G098100 0.5kb upstream 0.5kb upstream 500 false Chr09: 36083461-36083960 Sorghum bicolor
Sobic.009G098100 0.5kb downstream 0.5kb downstream 5280 true Chr09: 36078181-36083460 Sorghum bicolor
Sobic.009G098100 0.5kb downstream 0.5kb downstream 500 false Chr09: 36078181-36078680 Sorghum bicolor
Sobic.009G098100 1.0kb upstream 1.0kb upstream 5780 true Chr09: 36078681-36084460 Sorghum bicolor
Sobic.009G098100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 36083461-36084460 Sorghum bicolor
Sobic.009G098100 1.0kb downstream 1.0kb downstream 5780 true Chr09: 36077681-36083460 Sorghum bicolor
Sobic.009G098100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 36077681-36078680 Sorghum bicolor
Sobic.009G098100 2.0kb upstream 2.0kb upstream 6780 true Chr09: 36078681-36085460 Sorghum bicolor
Sobic.009G098100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 36083461-36085460 Sorghum bicolor
Sobic.009G098100 2.0kb downstream 2.0kb downstream 6780 true Chr09: 36076681-36083460 Sorghum bicolor
Sobic.009G098100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 36076681-36078680 Sorghum bicolor
Sobic.009G098100 5.0kb upstream 5.0kb upstream 9780 true Chr09: 36078681-36088460 Sorghum bicolor
Sobic.009G098100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 36083461-36088460 Sorghum bicolor
Sobic.009G098100 5.0kb downstream 5.0kb downstream 9780 true Chr09: 36073681-36083460 Sorghum bicolor
Sobic.009G098100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 36073681-36078680 Sorghum bicolor
Sobic.009G098100 10.0kb upstream 10.0kb upstream 14780 true Chr09: 36078681-36093460 Sorghum bicolor
Sobic.009G098100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 36083461-36093460 Sorghum bicolor
Sobic.009G098100 10.0kb downstream 10.0kb downstream 14780 true Chr09: 36068681-36083460 Sorghum bicolor
Sobic.009G098100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 36068681-36078680 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198054 5267 Panicoideae View MSA
124572004 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.394       Low
cufflinks 3.406        
cufflinks 19.663     High  
cufflinks 7.487        
cufflinks 12.618        
cufflinks 3.505        
cufflinks 74.187     High High
cufflinks 57.755     High High
cufflinks 4.006        
cufflinks 4.015        
cufflinks 1.318       Low
cufflinks 1.516        
cufflinks 1.852        
cufflinks 1.163       Low
cufflinks 6.715        
cufflinks 8.336        
cufflinks 76.889     High High
cufflinks 99.966     High High
cufflinks 8.784        
cufflinks 21.998     High  
cufflinks 10.783        
cufflinks 1.499        
cufflinks 1.715        
cufflinks 2.047        
cufflinks 1.197       Low
cufflinks 1.582        
cufflinks 1.703        
cufflinks 1.695        
cufflinks 313.632     High High
cufflinks 13.5     High  

0 Strain