Gene : Sobic.004G261500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10210:SF34 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 4 Genomic Order:  2735
Name:  ? Sobic.004G261500 Secondary Identifier:  ? PAC:37931720
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-662 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G261500 0.5kb upstream 0.5kb upstream 3208 true Chr04: 60669475-60672682 Sorghum bicolor
Sobic.004G261500 0.5kb upstream 0.5kb upstream 500 false Chr04: 60672183-60672682 Sorghum bicolor
Sobic.004G261500 0.5kb downstream 0.5kb downstream 3208 true Chr04: 60668975-60672182 Sorghum bicolor
Sobic.004G261500 0.5kb downstream 0.5kb downstream 500 false Chr04: 60668975-60669474 Sorghum bicolor
Sobic.004G261500 1.0kb upstream 1.0kb upstream 3708 true Chr04: 60669475-60673182 Sorghum bicolor
Sobic.004G261500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 60672183-60673182 Sorghum bicolor
Sobic.004G261500 1.0kb downstream 1.0kb downstream 3708 true Chr04: 60668475-60672182 Sorghum bicolor
Sobic.004G261500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 60668475-60669474 Sorghum bicolor
Sobic.004G261500 2.0kb upstream 2.0kb upstream 4708 true Chr04: 60669475-60674182 Sorghum bicolor
Sobic.004G261500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 60672183-60674182 Sorghum bicolor
Sobic.004G261500 2.0kb downstream 2.0kb downstream 4708 true Chr04: 60667475-60672182 Sorghum bicolor
Sobic.004G261500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 60667475-60669474 Sorghum bicolor
Sobic.004G261500 5.0kb upstream 5.0kb upstream 7708 true Chr04: 60669475-60677182 Sorghum bicolor
Sobic.004G261500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 60672183-60677182 Sorghum bicolor
Sobic.004G261500 5.0kb downstream 5.0kb downstream 7708 true Chr04: 60664475-60672182 Sorghum bicolor
Sobic.004G261500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 60664475-60669474 Sorghum bicolor
Sobic.004G261500 10.0kb upstream 10.0kb upstream 12708 true Chr04: 60669475-60682182 Sorghum bicolor
Sobic.004G261500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 60672183-60682182 Sorghum bicolor
Sobic.004G261500 10.0kb downstream 10.0kb downstream 12708 true Chr04: 60659475-60672182 Sorghum bicolor
Sobic.004G261500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 60659475-60669474 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196218 5267 Panicoideae View MSA
124573166 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.393     High High
cufflinks 6.693     High Low
cufflinks 6.058       Low
cufflinks 9.723        
cufflinks 27.93     High  
cufflinks 8.528       Low
cufflinks 17.726     High  
cufflinks 9.98     High  
cufflinks 18.769     High  
cufflinks 22.812     High  
cufflinks 60.85     High High
cufflinks 26.684     High  
cufflinks 18.489     High  
cufflinks 128.114     High High
cufflinks 17.426     High  
cufflinks 6.19       Low
cufflinks 18.448     High  
cufflinks 18.61     High  
cufflinks 6.978       Low
cufflinks 11.179        
cufflinks 29.033     High  
cufflinks 32.846     High  
cufflinks 44.435     High High
cufflinks 50.826     High High
cufflinks 5.675       Low
cufflinks 8.079     High Low
cufflinks 44.102     High High
cufflinks 12.243     High  
cufflinks 10.08        
cufflinks 23.081     High  

0 Strain