Gene : Sobic.009G114500 S. bicolor v3.1.1
Defline:  (1 of 3) K00949 - thiamine pyrophosphokinase (thiN, TPK1, THI80) Genomic Order:  1178
Name:  ? Sobic.009G114500 Secondary Identifier:  ? PAC:37921118
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6908 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G114500 0.5kb upstream 0.5kb upstream 4133 true Chr09: 45556055-45560187 Sorghum bicolor
Sobic.009G114500 0.5kb upstream 0.5kb upstream 500 false Chr09: 45559688-45560187 Sorghum bicolor
Sobic.009G114500 0.5kb downstream 0.5kb downstream 4133 true Chr09: 45555555-45559687 Sorghum bicolor
Sobic.009G114500 0.5kb downstream 0.5kb downstream 500 false Chr09: 45555555-45556054 Sorghum bicolor
Sobic.009G114500 1.0kb upstream 1.0kb upstream 4633 true Chr09: 45556055-45560687 Sorghum bicolor
Sobic.009G114500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 45559688-45560687 Sorghum bicolor
Sobic.009G114500 1.0kb downstream 1.0kb downstream 4633 true Chr09: 45555055-45559687 Sorghum bicolor
Sobic.009G114500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 45555055-45556054 Sorghum bicolor
Sobic.009G114500 2.0kb upstream 2.0kb upstream 5633 true Chr09: 45556055-45561687 Sorghum bicolor
Sobic.009G114500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 45559688-45561687 Sorghum bicolor
Sobic.009G114500 2.0kb downstream 2.0kb downstream 5633 true Chr09: 45554055-45559687 Sorghum bicolor
Sobic.009G114500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 45554055-45556054 Sorghum bicolor
Sobic.009G114500 5.0kb upstream 5.0kb upstream 8633 true Chr09: 45556055-45564687 Sorghum bicolor
Sobic.009G114500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 45559688-45564687 Sorghum bicolor
Sobic.009G114500 5.0kb downstream 5.0kb downstream 8633 true Chr09: 45551055-45559687 Sorghum bicolor
Sobic.009G114500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 45551055-45556054 Sorghum bicolor
Sobic.009G114500 10.0kb upstream 10.0kb upstream 13633 true Chr09: 45556055-45569687 Sorghum bicolor
Sobic.009G114500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 45559688-45569687 Sorghum bicolor
Sobic.009G114500 10.0kb downstream 10.0kb downstream 13633 true Chr09: 45546055-45559687 Sorghum bicolor
Sobic.009G114500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 45546055-45556054 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177462 5267 Panicoideae View MSA
124570032 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.747       Low
cufflinks 1.663        
cufflinks 5.283       High
cufflinks 6.027       High
cufflinks 3.608        
cufflinks 4.462        
cufflinks 1.579        
cufflinks 4.369        
cufflinks 1.106        
cufflinks 0.985        
cufflinks 1.292        
cufflinks 1.575        
cufflinks 2.131        
cufflinks 1.415        
cufflinks 2.426        
cufflinks 2.204        
cufflinks 1.729        
cufflinks 1.846        
cufflinks 4.849       High
cufflinks 2.447        
cufflinks 0.095     Low Low
cufflinks 1.619        
cufflinks 1.303        
cufflinks 1.252        
cufflinks 2.546        
cufflinks 2.805        
cufflinks 2.302        
cufflinks 0.472       Low
cufflinks 2.908        
cufflinks 1.221        

0 Strain