Gene : Sobic.004G251200 S. bicolor v3.1.1
Defline:  (1 of 3) K01874 - methionyl-tRNA synthetase (MARS, metG) Genomic Order:  2623
Name:  ? Sobic.004G251200 Secondary Identifier:  ? PAC:37929505
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G251200 0.5kb upstream 0.5kb upstream 6454 true Chr04: 59746625-59753078 Sorghum bicolor
Sobic.004G251200 0.5kb upstream 0.5kb upstream 500 false Chr04: 59746625-59747124 Sorghum bicolor
Sobic.004G251200 0.5kb downstream 0.5kb downstream 6454 true Chr04: 59747125-59753578 Sorghum bicolor
Sobic.004G251200 0.5kb downstream 0.5kb downstream 500 false Chr04: 59753079-59753578 Sorghum bicolor
Sobic.004G251200 1.0kb upstream 1.0kb upstream 6954 true Chr04: 59746125-59753078 Sorghum bicolor
Sobic.004G251200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 59746125-59747124 Sorghum bicolor
Sobic.004G251200 1.0kb downstream 1.0kb downstream 6954 true Chr04: 59747125-59754078 Sorghum bicolor
Sobic.004G251200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 59753079-59754078 Sorghum bicolor
Sobic.004G251200 2.0kb upstream 2.0kb upstream 7954 true Chr04: 59745125-59753078 Sorghum bicolor
Sobic.004G251200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 59745125-59747124 Sorghum bicolor
Sobic.004G251200 2.0kb downstream 2.0kb downstream 7954 true Chr04: 59747125-59755078 Sorghum bicolor
Sobic.004G251200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 59753079-59755078 Sorghum bicolor
Sobic.004G251200 5.0kb upstream 5.0kb upstream 10954 true Chr04: 59742125-59753078 Sorghum bicolor
Sobic.004G251200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 59742125-59747124 Sorghum bicolor
Sobic.004G251200 5.0kb downstream 5.0kb downstream 10954 true Chr04: 59747125-59758078 Sorghum bicolor
Sobic.004G251200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 59753079-59758078 Sorghum bicolor
Sobic.004G251200 10.0kb upstream 10.0kb upstream 15954 true Chr04: 59737125-59753078 Sorghum bicolor
Sobic.004G251200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 59737125-59747124 Sorghum bicolor
Sobic.004G251200 10.0kb downstream 10.0kb downstream 15954 true Chr04: 59747125-59763078 Sorghum bicolor
Sobic.004G251200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 59753079-59763078 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029887 5273 Angiosperm View MSA
122187020 5267 Panicoideae View MSA
124465901 5269 Grass View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.519        
cufflinks 2.524        
cufflinks 10.516     High High
cufflinks 18.355     High High
cufflinks 1.763        
cufflinks 7.899        
cufflinks 1.544       Low
cufflinks 2.074        
cufflinks 20.178     High High
cufflinks 16.14     High High
cufflinks 7.002        
cufflinks 13.634     High High
cufflinks 11.17       High
cufflinks 5.653        
cufflinks 3.799        
cufflinks 5.595        
cufflinks 1.475       Low
cufflinks 1.482       Low
cufflinks 4.068        
cufflinks 5.318        
cufflinks 1.669        
cufflinks 4.164        
cufflinks 4.52        
cufflinks 3.933        
cufflinks 4.22        
cufflinks 4.135        
cufflinks 14.392     High High
cufflinks 0.146       Low
cufflinks 0.893       Low
cufflinks 3.695        

0 Strain