Gene : Sobic.009G122100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13247//PTHR13247:SF3 - TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 // SUBFAMILY NOT NAMED Genomic Order:  1254
Name:  ? Sobic.009G122100 Secondary Identifier:  ? PAC:37920933
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G122100 0.5kb upstream 0.5kb upstream 7840 true Chr09: 47260961-47268800 Sorghum bicolor
Sobic.009G122100 0.5kb upstream 0.5kb upstream 500 false Chr09: 47268301-47268800 Sorghum bicolor
Sobic.009G122100 0.5kb downstream 0.5kb downstream 7840 true Chr09: 47260461-47268300 Sorghum bicolor
Sobic.009G122100 0.5kb downstream 0.5kb downstream 500 false Chr09: 47260461-47260960 Sorghum bicolor
Sobic.009G122100 1.0kb upstream 1.0kb upstream 8340 true Chr09: 47260961-47269300 Sorghum bicolor
Sobic.009G122100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47268301-47269300 Sorghum bicolor
Sobic.009G122100 1.0kb downstream 1.0kb downstream 8340 true Chr09: 47259961-47268300 Sorghum bicolor
Sobic.009G122100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47259961-47260960 Sorghum bicolor
Sobic.009G122100 2.0kb upstream 2.0kb upstream 9340 true Chr09: 47260961-47270300 Sorghum bicolor
Sobic.009G122100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47268301-47270300 Sorghum bicolor
Sobic.009G122100 2.0kb downstream 2.0kb downstream 9340 true Chr09: 47258961-47268300 Sorghum bicolor
Sobic.009G122100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47258961-47260960 Sorghum bicolor
Sobic.009G122100 5.0kb upstream 5.0kb upstream 12340 true Chr09: 47260961-47273300 Sorghum bicolor
Sobic.009G122100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47268301-47273300 Sorghum bicolor
Sobic.009G122100 5.0kb downstream 5.0kb downstream 12340 true Chr09: 47255961-47268300 Sorghum bicolor
Sobic.009G122100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47255961-47260960 Sorghum bicolor
Sobic.009G122100 10.0kb upstream 10.0kb upstream 17340 true Chr09: 47260961-47278300 Sorghum bicolor
Sobic.009G122100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47268301-47278300 Sorghum bicolor
Sobic.009G122100 10.0kb downstream 10.0kb downstream 17340 true Chr09: 47250961-47268300 Sorghum bicolor
Sobic.009G122100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47250961-47260960 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180680 5267 Panicoideae View MSA
124575765 5269 Grass View MSA
122046203 5273 Angiosperm View MSA
123429111 5275 Viridiplantae View MSA
121347777 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.896       High
cufflinks 2.54       Low
cufflinks 4.959        
cufflinks 7.781       High
cufflinks 4.968        
cufflinks 4.659        
cufflinks 3.811        
cufflinks 2.636       Low
cufflinks 7.67       High
cufflinks 8.024       High
cufflinks 4.023        
cufflinks 5.686        
cufflinks 7.356       High
cufflinks 5.347        
cufflinks 6.458        
cufflinks 4.88        
cufflinks 4.761        
cufflinks 4.47        
cufflinks 3.594        
cufflinks 7.674       High
cufflinks 3.676        
cufflinks 5.321        
cufflinks 5.446        
cufflinks 4.893        
cufflinks 3.615        
cufflinks 2.209       Low
cufflinks 6.784       High
cufflinks 6.553        
cufflinks 4.065        
cufflinks 6.636       High

0 Strain