Gene : Sobic.004G293100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR14969:SF13 - AT30094P Genomic Order:  3074
Name:  ? Sobic.004G293100 Secondary Identifier:  ? PAC:37929099
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRIGLSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G293100 0.5kb upstream 0.5kb upstream 1503 true Chr04: 63339058-63340560 Sorghum bicolor
Sobic.004G293100 0.5kb upstream 0.5kb upstream 500 false Chr04: 63340061-63340560 Sorghum bicolor
Sobic.004G293100 0.5kb downstream 0.5kb downstream 1503 true Chr04: 63338558-63340060 Sorghum bicolor
Sobic.004G293100 0.5kb downstream 0.5kb downstream 500 false Chr04: 63338558-63339057 Sorghum bicolor
Sobic.004G293100 1.0kb upstream 1.0kb upstream 2003 true Chr04: 63339058-63341060 Sorghum bicolor
Sobic.004G293100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 63340061-63341060 Sorghum bicolor
Sobic.004G293100 1.0kb downstream 1.0kb downstream 2003 true Chr04: 63338058-63340060 Sorghum bicolor
Sobic.004G293100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 63338058-63339057 Sorghum bicolor
Sobic.004G293100 2.0kb upstream 2.0kb upstream 3003 true Chr04: 63339058-63342060 Sorghum bicolor
Sobic.004G293100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 63340061-63342060 Sorghum bicolor
Sobic.004G293100 2.0kb downstream 2.0kb downstream 3003 true Chr04: 63337058-63340060 Sorghum bicolor
Sobic.004G293100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 63337058-63339057 Sorghum bicolor
Sobic.004G293100 5.0kb upstream 5.0kb upstream 6003 true Chr04: 63339058-63345060 Sorghum bicolor
Sobic.004G293100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 63340061-63345060 Sorghum bicolor
Sobic.004G293100 5.0kb downstream 5.0kb downstream 6003 true Chr04: 63334058-63340060 Sorghum bicolor
Sobic.004G293100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 63334058-63339057 Sorghum bicolor
Sobic.004G293100 10.0kb upstream 10.0kb upstream 11003 true Chr04: 63339058-63350060 Sorghum bicolor
Sobic.004G293100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 63340061-63350060 Sorghum bicolor
Sobic.004G293100 10.0kb downstream 10.0kb downstream 11003 true Chr04: 63329058-63340060 Sorghum bicolor
Sobic.004G293100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 63329058-63339057 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178055 5267 Panicoideae View MSA
124573947 5269 Grass View MSA
122043486 5273 Angiosperm View MSA
121349083 5274 Embryophyte View MSA
123381157 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.993       High
cufflinks 0.196       Low
cufflinks 0.086       Low
cufflinks 0.108       Low
cufflinks 0.424        
cufflinks 0.215        
cufflinks 0.651        
cufflinks 0.803        
cufflinks 0.327        
cufflinks 0.37        
cufflinks 0.581        
cufflinks 0.773        
cufflinks 0.242        
cufflinks 1.021       High
cufflinks 0.226        
cufflinks 0.189       Low
cufflinks 0.717        
cufflinks 0.556        
cufflinks 0.558        
cufflinks 0.472        
cufflinks 0.336        
cufflinks 2.357       High
cufflinks 0.483        
cufflinks 0.738        
cufflinks 0.345        
cufflinks 0.149       Low
cufflinks 0.236        
cufflinks 0.391        
cufflinks 1.334       High
cufflinks 0.307        

0 Strain