Gene : Sobic.009G201700 S. bicolor v3.1.1
Defline:  (1 of 3) K07151 - dolichyl-diphosphooligosaccharide--protein glycosyltransferase (STT3) Genomic Order:  2085
Name:  ? Sobic.009G201700 Secondary Identifier:  ? PAC:37921473
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G201700 0.5kb upstream 0.5kb upstream 6525 true Chr09: 55106601-55113125 Sorghum bicolor
Sobic.009G201700 0.5kb upstream 0.5kb upstream 500 false Chr09: 55112626-55113125 Sorghum bicolor
Sobic.009G201700 0.5kb downstream 0.5kb downstream 6525 true Chr09: 55106101-55112625 Sorghum bicolor
Sobic.009G201700 0.5kb downstream 0.5kb downstream 500 false Chr09: 55106101-55106600 Sorghum bicolor
Sobic.009G201700 1.0kb upstream 1.0kb upstream 7025 true Chr09: 55106601-55113625 Sorghum bicolor
Sobic.009G201700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 55112626-55113625 Sorghum bicolor
Sobic.009G201700 1.0kb downstream 1.0kb downstream 7025 true Chr09: 55105601-55112625 Sorghum bicolor
Sobic.009G201700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 55105601-55106600 Sorghum bicolor
Sobic.009G201700 2.0kb upstream 2.0kb upstream 8025 true Chr09: 55106601-55114625 Sorghum bicolor
Sobic.009G201700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 55112626-55114625 Sorghum bicolor
Sobic.009G201700 2.0kb downstream 2.0kb downstream 8025 true Chr09: 55104601-55112625 Sorghum bicolor
Sobic.009G201700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 55104601-55106600 Sorghum bicolor
Sobic.009G201700 5.0kb upstream 5.0kb upstream 11025 true Chr09: 55106601-55117625 Sorghum bicolor
Sobic.009G201700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 55112626-55117625 Sorghum bicolor
Sobic.009G201700 5.0kb downstream 5.0kb downstream 11025 true Chr09: 55101601-55112625 Sorghum bicolor
Sobic.009G201700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 55101601-55106600 Sorghum bicolor
Sobic.009G201700 10.0kb upstream 10.0kb upstream 16025 true Chr09: 55106601-55122625 Sorghum bicolor
Sobic.009G201700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 55112626-55122625 Sorghum bicolor
Sobic.009G201700 10.0kb downstream 10.0kb downstream 16025 true Chr09: 55096601-55112625 Sorghum bicolor
Sobic.009G201700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 55096601-55106600 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041451 5273 Angiosperm View MSA
122197856 5267 Panicoideae View MSA
124588615 5269 Grass View MSA
121345608 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.027     High  
cufflinks 4.267       Low
cufflinks 22.914     High  
cufflinks 28.902     High  
cufflinks 28.616     High  
cufflinks 16.112     High  
cufflinks 20.237     High  
cufflinks 8.349       Low
cufflinks 35.507     High  
cufflinks 30.583     High  
cufflinks 29.276     High  
cufflinks 32.966     High  
cufflinks 24.189     High  
cufflinks 30.564     High  
cufflinks 22.388     High  
cufflinks 13.738     High  
cufflinks 20.619     High  
cufflinks 21.779     High  
cufflinks 15.689     High  
cufflinks 28.259     High  
cufflinks 24.547     High  
cufflinks 35.103     High  
cufflinks 36.748     High  
cufflinks 35.99     High  
cufflinks 14.665     High  
cufflinks 4.294       Low
cufflinks 30.579     High  
cufflinks 3.436       Low
cufflinks 18.158     High  
cufflinks 34.466     High  

0 Strain