Gene : Sobic.009G209300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  2164
Name:  ? Sobic.009G209300 Secondary Identifier:  ? PAC:37919917
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYCOGENSYNTH-PWY Sorghum bicolor pathologic  
Sbicolor PWY-622 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G209300 0.5kb upstream 0.5kb upstream 8625 true Chr09: 55613468-55622092 Sorghum bicolor
Sobic.009G209300 0.5kb upstream 0.5kb upstream 500 false Chr09: 55613468-55613967 Sorghum bicolor
Sobic.009G209300 0.5kb downstream 0.5kb downstream 8625 true Chr09: 55613968-55622592 Sorghum bicolor
Sobic.009G209300 0.5kb downstream 0.5kb downstream 500 false Chr09: 55622093-55622592 Sorghum bicolor
Sobic.009G209300 1.0kb upstream 1.0kb upstream 9125 true Chr09: 55612968-55622092 Sorghum bicolor
Sobic.009G209300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 55612968-55613967 Sorghum bicolor
Sobic.009G209300 1.0kb downstream 1.0kb downstream 9125 true Chr09: 55613968-55623092 Sorghum bicolor
Sobic.009G209300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 55622093-55623092 Sorghum bicolor
Sobic.009G209300 2.0kb upstream 2.0kb upstream 10125 true Chr09: 55611968-55622092 Sorghum bicolor
Sobic.009G209300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 55611968-55613967 Sorghum bicolor
Sobic.009G209300 2.0kb downstream 2.0kb downstream 10125 true Chr09: 55613968-55624092 Sorghum bicolor
Sobic.009G209300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 55622093-55624092 Sorghum bicolor
Sobic.009G209300 5.0kb upstream 5.0kb upstream 13125 true Chr09: 55608968-55622092 Sorghum bicolor
Sobic.009G209300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 55608968-55613967 Sorghum bicolor
Sobic.009G209300 5.0kb downstream 5.0kb downstream 13125 true Chr09: 55613968-55627092 Sorghum bicolor
Sobic.009G209300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 55622093-55627092 Sorghum bicolor
Sobic.009G209300 10.0kb upstream 10.0kb upstream 18125 true Chr09: 55603968-55622092 Sorghum bicolor
Sobic.009G209300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 55603968-55613967 Sorghum bicolor
Sobic.009G209300 10.0kb downstream 10.0kb downstream 18125 true Chr09: 55613968-55632092 Sorghum bicolor
Sobic.009G209300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 55622093-55632092 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189391 5267 Panicoideae View MSA
124578861 5269 Grass View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.621       Low
cufflinks 3.372        
cufflinks 3.637        
cufflinks 2.881        
cufflinks 2.982        
cufflinks 4.294       High
cufflinks 3.085        
cufflinks 3.917       High
cufflinks 1.896        
cufflinks 2.196        
cufflinks 0.953       Low
cufflinks 0.826       Low
cufflinks 3.059        
cufflinks 0.722       Low
cufflinks 3.606        
cufflinks 2.969        
cufflinks 2.659        
cufflinks 3.534        
cufflinks 3.234        
cufflinks 1.756        
cufflinks 1.859        
cufflinks 0.707       Low
cufflinks 0.804       Low
cufflinks 0.858       Low
cufflinks 3.596        
cufflinks 3.95       High
cufflinks 1.045       Low
cufflinks 1.773        
cufflinks 5.27       High
cufflinks 3.915       High

0 Strain