Gene : Sobic.004G281900 S. bicolor v3.1.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  2950
Name:  ? Sobic.004G281900 Secondary Identifier:  ? PAC:37928858
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7560 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G281900 0.5kb upstream 0.5kb upstream 3169 true Chr04: 62410387-62413555 Sorghum bicolor
Sobic.004G281900 0.5kb upstream 0.5kb upstream 500 false Chr04: 62410387-62410886 Sorghum bicolor
Sobic.004G281900 0.5kb downstream 0.5kb downstream 3169 true Chr04: 62410887-62414055 Sorghum bicolor
Sobic.004G281900 0.5kb downstream 0.5kb downstream 500 false Chr04: 62413556-62414055 Sorghum bicolor
Sobic.004G281900 1.0kb upstream 1.0kb upstream 3669 true Chr04: 62409887-62413555 Sorghum bicolor
Sobic.004G281900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 62409887-62410886 Sorghum bicolor
Sobic.004G281900 1.0kb downstream 1.0kb downstream 3669 true Chr04: 62410887-62414555 Sorghum bicolor
Sobic.004G281900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 62413556-62414555 Sorghum bicolor
Sobic.004G281900 2.0kb upstream 2.0kb upstream 4669 true Chr04: 62408887-62413555 Sorghum bicolor
Sobic.004G281900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 62408887-62410886 Sorghum bicolor
Sobic.004G281900 2.0kb downstream 2.0kb downstream 4669 true Chr04: 62410887-62415555 Sorghum bicolor
Sobic.004G281900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 62413556-62415555 Sorghum bicolor
Sobic.004G281900 5.0kb upstream 5.0kb upstream 7669 true Chr04: 62405887-62413555 Sorghum bicolor
Sobic.004G281900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 62405887-62410886 Sorghum bicolor
Sobic.004G281900 5.0kb downstream 5.0kb downstream 7669 true Chr04: 62410887-62418555 Sorghum bicolor
Sobic.004G281900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 62413556-62418555 Sorghum bicolor
Sobic.004G281900 10.0kb upstream 10.0kb upstream 12669 true Chr04: 62400887-62413555 Sorghum bicolor
Sobic.004G281900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 62400887-62410886 Sorghum bicolor
Sobic.004G281900 10.0kb downstream 10.0kb downstream 12669 true Chr04: 62410887-62423555 Sorghum bicolor
Sobic.004G281900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 62413556-62423555 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192729 5267 Panicoideae View MSA
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.686        
cufflinks 13.102     High High
cufflinks 6.355        
cufflinks 5.105        
cufflinks 1.171       Low
cufflinks 7.61       High
cufflinks 6.421        
cufflinks 7.69       High
cufflinks 2.343        
cufflinks 2.947        
cufflinks 2.147        
cufflinks 2.127        
cufflinks 3.788        
cufflinks 1.715        
cufflinks 2.748        
cufflinks 4.917        
cufflinks 7.732       High
cufflinks 6.929       High
cufflinks 5.256        
cufflinks 5.057        
cufflinks 1.55       Low
cufflinks 1.807        
cufflinks 2.806        
cufflinks 3.206        
cufflinks 10.615     High High
cufflinks 14.579     High High
cufflinks 2.619        
cufflinks 0.864       Low
cufflinks 7.113       High
cufflinks 2.876        

0 Strain