Gene : Sobic.009G215300 S. bicolor v3.1.1
Defline:  similar to Putative fiber protein Genomic Order:  2226
Name:  ? Sobic.009G215300 Secondary Identifier:  ? PAC:37920328
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G215300 0.5kb upstream 0.5kb upstream 2979 true Chr09: 55999399-56002377 Sorghum bicolor
Sobic.009G215300 0.5kb upstream 0.5kb upstream 500 false Chr09: 56001878-56002377 Sorghum bicolor
Sobic.009G215300 0.5kb downstream 0.5kb downstream 2979 true Chr09: 55998899-56001877 Sorghum bicolor
Sobic.009G215300 0.5kb downstream 0.5kb downstream 500 false Chr09: 55998899-55999398 Sorghum bicolor
Sobic.009G215300 1.0kb upstream 1.0kb upstream 3479 true Chr09: 55999399-56002877 Sorghum bicolor
Sobic.009G215300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 56001878-56002877 Sorghum bicolor
Sobic.009G215300 1.0kb downstream 1.0kb downstream 3479 true Chr09: 55998399-56001877 Sorghum bicolor
Sobic.009G215300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 55998399-55999398 Sorghum bicolor
Sobic.009G215300 2.0kb upstream 2.0kb upstream 4479 true Chr09: 55999399-56003877 Sorghum bicolor
Sobic.009G215300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 56001878-56003877 Sorghum bicolor
Sobic.009G215300 2.0kb downstream 2.0kb downstream 4479 true Chr09: 55997399-56001877 Sorghum bicolor
Sobic.009G215300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 55997399-55999398 Sorghum bicolor
Sobic.009G215300 5.0kb upstream 5.0kb upstream 7479 true Chr09: 55999399-56006877 Sorghum bicolor
Sobic.009G215300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 56001878-56006877 Sorghum bicolor
Sobic.009G215300 5.0kb downstream 5.0kb downstream 7479 true Chr09: 55994399-56001877 Sorghum bicolor
Sobic.009G215300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 55994399-55999398 Sorghum bicolor
Sobic.009G215300 10.0kb upstream 10.0kb upstream 12479 true Chr09: 55999399-56011877 Sorghum bicolor
Sobic.009G215300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 56001878-56011877 Sorghum bicolor
Sobic.009G215300 10.0kb downstream 10.0kb downstream 12479 true Chr09: 55989399-56001877 Sorghum bicolor
Sobic.009G215300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 55989399-55999398 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192308 5267 Panicoideae View MSA
124579982 5269 Grass View MSA
122046096 5273 Angiosperm View MSA
121344412 5274 Embryophyte View MSA
123380039 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.145     High  
cufflinks 8.234     High Low
cufflinks 13.756     High Low
cufflinks 27.496     High  
cufflinks 25.225     High  
cufflinks 16.465     High  
cufflinks 30.473     High  
cufflinks 12.253     High Low
cufflinks 21.563     High  
cufflinks 28.948     High  
cufflinks 28.446     High  
cufflinks 32.641     High  
cufflinks 20.494     High  
cufflinks 47.366     High High
cufflinks 28.2     High  
cufflinks 18.466     High  
cufflinks 36.393     High  
cufflinks 33.779     High  
cufflinks 9.575       Low
cufflinks 39.706     High  
cufflinks 18.827     High  
cufflinks 48.714     High High
cufflinks 44.104     High High
cufflinks 47.531     High High
cufflinks 10.079     High Low
cufflinks 7.235     High Low
cufflinks 20.272     High  
cufflinks 12.455     High Low
cufflinks 23.854     High  
cufflinks 21.46     High  

0 Strain