Gene : Sobic.009G225700 S. bicolor v3.1.1
Defline:  (1 of 2) K00264 - glutamate synthase (NADPH/NADH) (GLT1) Genomic Order:  2330
Name:  ? Sobic.009G225700 Secondary Identifier:  ? PAC:37921156
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLUGLNSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3282 Sorghum bicolor pathologic  
Sbicolor PWY-6963 Sorghum bicolor pathologic  

Genomics

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Expression

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G225700 0.5kb upstream 0.5kb upstream 12641 true Chr09: 56757552-56770192 Sorghum bicolor
Sobic.009G225700 0.5kb upstream 0.5kb upstream 500 false Chr09: 56757552-56758051 Sorghum bicolor
Sobic.009G225700 0.5kb downstream 0.5kb downstream 12641 true Chr09: 56758052-56770692 Sorghum bicolor
Sobic.009G225700 0.5kb downstream 0.5kb downstream 500 false Chr09: 56770193-56770692 Sorghum bicolor
Sobic.009G225700 1.0kb upstream 1.0kb upstream 13141 true Chr09: 56757052-56770192 Sorghum bicolor
Sobic.009G225700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 56757052-56758051 Sorghum bicolor
Sobic.009G225700 1.0kb downstream 1.0kb downstream 13141 true Chr09: 56758052-56771192 Sorghum bicolor
Sobic.009G225700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 56770193-56771192 Sorghum bicolor
Sobic.009G225700 2.0kb upstream 2.0kb upstream 14141 true Chr09: 56756052-56770192 Sorghum bicolor
Sobic.009G225700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 56756052-56758051 Sorghum bicolor
Sobic.009G225700 2.0kb downstream 2.0kb downstream 14141 true Chr09: 56758052-56772192 Sorghum bicolor
Sobic.009G225700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 56770193-56772192 Sorghum bicolor
Sobic.009G225700 5.0kb upstream 5.0kb upstream 17141 true Chr09: 56753052-56770192 Sorghum bicolor
Sobic.009G225700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 56753052-56758051 Sorghum bicolor
Sobic.009G225700 5.0kb downstream 5.0kb downstream 17141 true Chr09: 56758052-56775192 Sorghum bicolor
Sobic.009G225700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 56770193-56775192 Sorghum bicolor
Sobic.009G225700 10.0kb upstream 10.0kb upstream 22141 true Chr09: 56748052-56770192 Sorghum bicolor
Sobic.009G225700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 56748052-56758051 Sorghum bicolor
Sobic.009G225700 10.0kb downstream 10.0kb downstream 22141 true Chr09: 56758052-56780192 Sorghum bicolor
Sobic.009G225700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 56770193-56780192 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993114 5273 Angiosperm View MSA
122192470 5267 Panicoideae View MSA
124575023 5269 Grass View MSA
121263420 5274 Embryophyte View MSA
123426109 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.48        
cufflinks 0.013     Low Low
cufflinks 0.054     Low Low
cufflinks 0.045     Low Low
cufflinks 1.516        
cufflinks 0.124        
cufflinks 0.54        
cufflinks 0.173        
cufflinks 0.191        
cufflinks 0.243        
cufflinks 0.861        
cufflinks 4.312       High
cufflinks 0.166        
cufflinks 1.029        
cufflinks 0.614        
cufflinks 0.02     Low Low
cufflinks 0.403        
cufflinks 0.46        
cufflinks 0.033     Low Low
cufflinks 0.34        
cufflinks 3.774       High
cufflinks 9.459       High
cufflinks 2.347       High
cufflinks 0.875        
cufflinks 0.02     Low Low
cufflinks 0.013     Low Low
cufflinks 34.989     High High
cufflinks 2.091        
cufflinks 0.442        
cufflinks 0.756        

0 Strain