Gene : Sobic.004G273100 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  2859
Name:  ? Sobic.004G273100 Secondary Identifier:  ? PAC:37930464
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G273100 0.5kb upstream 0.5kb upstream 14091 true Chr04: 61678532-61692622 Sorghum bicolor
Sobic.004G273100 0.5kb upstream 0.5kb upstream 500 false Chr04: 61692123-61692622 Sorghum bicolor
Sobic.004G273100 0.5kb downstream 0.5kb downstream 14091 true Chr04: 61678032-61692122 Sorghum bicolor
Sobic.004G273100 0.5kb downstream 0.5kb downstream 500 false Chr04: 61678032-61678531 Sorghum bicolor
Sobic.004G273100 1.0kb upstream 1.0kb upstream 14591 true Chr04: 61678532-61693122 Sorghum bicolor
Sobic.004G273100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 61692123-61693122 Sorghum bicolor
Sobic.004G273100 1.0kb downstream 1.0kb downstream 14591 true Chr04: 61677532-61692122 Sorghum bicolor
Sobic.004G273100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 61677532-61678531 Sorghum bicolor
Sobic.004G273100 2.0kb upstream 2.0kb upstream 15591 true Chr04: 61678532-61694122 Sorghum bicolor
Sobic.004G273100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 61692123-61694122 Sorghum bicolor
Sobic.004G273100 2.0kb downstream 2.0kb downstream 15591 true Chr04: 61676532-61692122 Sorghum bicolor
Sobic.004G273100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 61676532-61678531 Sorghum bicolor
Sobic.004G273100 5.0kb upstream 5.0kb upstream 18591 true Chr04: 61678532-61697122 Sorghum bicolor
Sobic.004G273100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 61692123-61697122 Sorghum bicolor
Sobic.004G273100 5.0kb downstream 5.0kb downstream 18591 true Chr04: 61673532-61692122 Sorghum bicolor
Sobic.004G273100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 61673532-61678531 Sorghum bicolor
Sobic.004G273100 10.0kb upstream 10.0kb upstream 23591 true Chr04: 61678532-61702122 Sorghum bicolor
Sobic.004G273100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 61692123-61702122 Sorghum bicolor
Sobic.004G273100 10.0kb downstream 10.0kb downstream 23591 true Chr04: 61668532-61692122 Sorghum bicolor
Sobic.004G273100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 61668532-61678531 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187267 5267 Panicoideae View MSA
124582100 5269 Grass View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.949        
cufflinks 1.628        
cufflinks 2.507        
cufflinks 0.94       Low
cufflinks 3.61        
cufflinks 0.841       Low
cufflinks 4.083        
cufflinks 4.625        
cufflinks 0.402       Low
cufflinks 0.66       Low
cufflinks 10.408       High
cufflinks 8.049       High
cufflinks 1.52        
cufflinks 8.06       High
cufflinks 5.547        
cufflinks 1.191        
cufflinks 4.077        
cufflinks 4.71        
cufflinks 2.396        
cufflinks 3.834        
cufflinks 2.947        
cufflinks 7.378        
cufflinks 7.717        
cufflinks 8.107       High
cufflinks 0.633       Low
cufflinks 1.491        
cufflinks 3.615        
cufflinks 0.208       Low
cufflinks 8.469       High
cufflinks 4.474        

0 Strain