Gene : Sobic.009G228800 S. bicolor v3.1.1
Defline:  (1 of 2) K09658 - dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (DPM2) Genomic Order:  2362
Name:  ? Sobic.009G228800 Secondary Identifier:  ? PAC:37919304
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G228800 0.5kb upstream 0.5kb upstream 2876 true Chr09: 56954540-56957415 Sorghum bicolor
Sobic.009G228800 0.5kb upstream 0.5kb upstream 500 false Chr09: 56954540-56955039 Sorghum bicolor
Sobic.009G228800 0.5kb downstream 0.5kb downstream 2876 true Chr09: 56955040-56957915 Sorghum bicolor
Sobic.009G228800 0.5kb downstream 0.5kb downstream 500 false Chr09: 56957416-56957915 Sorghum bicolor
Sobic.009G228800 1.0kb upstream 1.0kb upstream 3376 true Chr09: 56954040-56957415 Sorghum bicolor
Sobic.009G228800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 56954040-56955039 Sorghum bicolor
Sobic.009G228800 1.0kb downstream 1.0kb downstream 3376 true Chr09: 56955040-56958415 Sorghum bicolor
Sobic.009G228800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 56957416-56958415 Sorghum bicolor
Sobic.009G228800 2.0kb upstream 2.0kb upstream 4376 true Chr09: 56953040-56957415 Sorghum bicolor
Sobic.009G228800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 56953040-56955039 Sorghum bicolor
Sobic.009G228800 2.0kb downstream 2.0kb downstream 4376 true Chr09: 56955040-56959415 Sorghum bicolor
Sobic.009G228800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 56957416-56959415 Sorghum bicolor
Sobic.009G228800 5.0kb upstream 5.0kb upstream 7376 true Chr09: 56950040-56957415 Sorghum bicolor
Sobic.009G228800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 56950040-56955039 Sorghum bicolor
Sobic.009G228800 5.0kb downstream 5.0kb downstream 7376 true Chr09: 56955040-56962415 Sorghum bicolor
Sobic.009G228800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 56957416-56962415 Sorghum bicolor
Sobic.009G228800 10.0kb upstream 10.0kb upstream 12376 true Chr09: 56945040-56957415 Sorghum bicolor
Sobic.009G228800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 56945040-56955039 Sorghum bicolor
Sobic.009G228800 10.0kb downstream 10.0kb downstream 12376 true Chr09: 56955040-56967415 Sorghum bicolor
Sobic.009G228800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 56957416-56967415 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198715 5267 Panicoideae View MSA
124570008 5269 Grass View MSA
122048718 5273 Angiosperm View MSA
121349039 5274 Embryophyte View MSA
123381135 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.36       High
cufflinks 2.015       Low
cufflinks 3.885        
cufflinks 6.685        
cufflinks 5.01        
cufflinks 6.926       High
cufflinks 4.72        
cufflinks 1.804       Low
cufflinks 6.135        
cufflinks 5.819        
cufflinks 4.991        
cufflinks 6.836       High
cufflinks 5.086        
cufflinks 5.067        
cufflinks 5.034        
cufflinks 3.465        
cufflinks 5.993        
cufflinks 5.848        
cufflinks 2.689       Low
cufflinks 7.158       High
cufflinks 5.122        
cufflinks 5.187        
cufflinks 5.908        
cufflinks 5.656        
cufflinks 3.053       Low
cufflinks 1.414       Low
cufflinks 4.547        
cufflinks 3.227       Low
cufflinks 4.291        
cufflinks 5.824        

0 Strain