Gene : Sobic.004G270600 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  2831
Name:  ? Sobic.004G270600 Secondary Identifier:  ? PAC:37930528
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G270600 0.5kb upstream 0.5kb upstream 3701 true Chr04: 61480770-61484470 Sorghum bicolor
Sobic.004G270600 0.5kb upstream 0.5kb upstream 500 false Chr04: 61483971-61484470 Sorghum bicolor
Sobic.004G270600 0.5kb downstream 0.5kb downstream 3701 true Chr04: 61480270-61483970 Sorghum bicolor
Sobic.004G270600 0.5kb downstream 0.5kb downstream 500 false Chr04: 61480270-61480769 Sorghum bicolor
Sobic.004G270600 1.0kb upstream 1.0kb upstream 4201 true Chr04: 61480770-61484970 Sorghum bicolor
Sobic.004G270600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 61483971-61484970 Sorghum bicolor
Sobic.004G270600 1.0kb downstream 1.0kb downstream 4201 true Chr04: 61479770-61483970 Sorghum bicolor
Sobic.004G270600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 61479770-61480769 Sorghum bicolor
Sobic.004G270600 2.0kb upstream 2.0kb upstream 5201 true Chr04: 61480770-61485970 Sorghum bicolor
Sobic.004G270600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 61483971-61485970 Sorghum bicolor
Sobic.004G270600 2.0kb downstream 2.0kb downstream 5201 true Chr04: 61478770-61483970 Sorghum bicolor
Sobic.004G270600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 61478770-61480769 Sorghum bicolor
Sobic.004G270600 5.0kb upstream 5.0kb upstream 8201 true Chr04: 61480770-61488970 Sorghum bicolor
Sobic.004G270600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 61483971-61488970 Sorghum bicolor
Sobic.004G270600 5.0kb downstream 5.0kb downstream 8201 true Chr04: 61475770-61483970 Sorghum bicolor
Sobic.004G270600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 61475770-61480769 Sorghum bicolor
Sobic.004G270600 10.0kb upstream 10.0kb upstream 13201 true Chr04: 61480770-61493970 Sorghum bicolor
Sobic.004G270600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 61483971-61493970 Sorghum bicolor
Sobic.004G270600 10.0kb downstream 10.0kb downstream 13201 true Chr04: 61470770-61483970 Sorghum bicolor
Sobic.004G270600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 61470770-61480769 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179778 5267 Panicoideae View MSA
124570211 5269 Grass View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.074       High
cufflinks 2.27        
cufflinks 2.698        
cufflinks 2.961        
cufflinks 0.54       Low
cufflinks 3.986        
cufflinks 3.234        
cufflinks 2.051        
cufflinks 2.8        
cufflinks 5.496       High
cufflinks 2.766        
cufflinks 1.547        
cufflinks 3.776        
cufflinks 3.076        
cufflinks 2.446        
cufflinks 2.914        
cufflinks 3.642        
cufflinks 2.532        
cufflinks 3.714        
cufflinks 2.384        
cufflinks 0.115       Low
cufflinks 5.152       High
cufflinks 3.126        
cufflinks 3.151        
cufflinks 2.108        
cufflinks 3.496        
cufflinks 0.716       Low
cufflinks 0.618       Low
cufflinks 1.667        
cufflinks 1.114        

0 Strain