Gene : Sobic.009G166300 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11254//PTHR11254:SF345 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // SUBFAMILY NOT NAMED Genomic Order:  1711
Name:  ? Sobic.009G166300 Secondary Identifier:  ? PAC:37922127
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7511 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G166300 0.5kb upstream 0.5kb upstream 9313 true Chr09: 52261447-52270759 Sorghum bicolor
Sobic.009G166300 0.5kb upstream 0.5kb upstream 500 false Chr09: 52270260-52270759 Sorghum bicolor
Sobic.009G166300 0.5kb downstream 0.5kb downstream 9313 true Chr09: 52260947-52270259 Sorghum bicolor
Sobic.009G166300 0.5kb downstream 0.5kb downstream 500 false Chr09: 52260947-52261446 Sorghum bicolor
Sobic.009G166300 1.0kb upstream 1.0kb upstream 9813 true Chr09: 52261447-52271259 Sorghum bicolor
Sobic.009G166300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 52270260-52271259 Sorghum bicolor
Sobic.009G166300 1.0kb downstream 1.0kb downstream 9813 true Chr09: 52260447-52270259 Sorghum bicolor
Sobic.009G166300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 52260447-52261446 Sorghum bicolor
Sobic.009G166300 2.0kb upstream 2.0kb upstream 10813 true Chr09: 52261447-52272259 Sorghum bicolor
Sobic.009G166300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 52270260-52272259 Sorghum bicolor
Sobic.009G166300 2.0kb downstream 2.0kb downstream 10813 true Chr09: 52259447-52270259 Sorghum bicolor
Sobic.009G166300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 52259447-52261446 Sorghum bicolor
Sobic.009G166300 5.0kb upstream 5.0kb upstream 13813 true Chr09: 52261447-52275259 Sorghum bicolor
Sobic.009G166300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 52270260-52275259 Sorghum bicolor
Sobic.009G166300 5.0kb downstream 5.0kb downstream 13813 true Chr09: 52256447-52270259 Sorghum bicolor
Sobic.009G166300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 52256447-52261446 Sorghum bicolor
Sobic.009G166300 10.0kb upstream 10.0kb upstream 18813 true Chr09: 52261447-52280259 Sorghum bicolor
Sobic.009G166300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 52270260-52280259 Sorghum bicolor
Sobic.009G166300 10.0kb downstream 10.0kb downstream 18813 true Chr09: 52251447-52270259 Sorghum bicolor
Sobic.009G166300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 52251447-52261446 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179694 5267 Panicoideae View MSA
124585478 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.661       Low
cufflinks 5.113       Low
cufflinks 6.721        
cufflinks 8.147        
cufflinks 9.063        
cufflinks 11.468        
cufflinks 6.935        
cufflinks 6.935        
cufflinks 18.495     High High
cufflinks 17.119     High High
cufflinks 13.908     High  
cufflinks 23.409     High High
cufflinks 12.145     High  
cufflinks 15.512     High High
cufflinks 14.273     High  
cufflinks 8.973        
cufflinks 7.214        
cufflinks 6.906        
cufflinks 7.05        
cufflinks 11.698        
cufflinks 13.876        
cufflinks 7.93        
cufflinks 14.455     High High
cufflinks 12.672     High  
cufflinks 10.25     High  
cufflinks 6.617     High  
cufflinks 13.743     High  
cufflinks 16.079     High High
cufflinks 4.83       Low
cufflinks 15.926     High High

0 Strain