Gene : Sobic.004G307900 S. bicolor v3.1.1
Defline:  (1 of 1) KOG4439 - RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily Genomic Order:  3233
Name:  ? Sobic.004G307900 Secondary Identifier:  ? PAC:37929064
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G307900 0.5kb upstream 0.5kb upstream 10011 true Chr04: 64555954-64565964 Sorghum bicolor
Sobic.004G307900 0.5kb upstream 0.5kb upstream 500 false Chr04: 64565465-64565964 Sorghum bicolor
Sobic.004G307900 0.5kb downstream 0.5kb downstream 10011 true Chr04: 64555454-64565464 Sorghum bicolor
Sobic.004G307900 0.5kb downstream 0.5kb downstream 500 false Chr04: 64555454-64555953 Sorghum bicolor
Sobic.004G307900 1.0kb upstream 1.0kb upstream 10511 true Chr04: 64555954-64566464 Sorghum bicolor
Sobic.004G307900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 64565465-64566464 Sorghum bicolor
Sobic.004G307900 1.0kb downstream 1.0kb downstream 10511 true Chr04: 64554954-64565464 Sorghum bicolor
Sobic.004G307900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 64554954-64555953 Sorghum bicolor
Sobic.004G307900 2.0kb upstream 2.0kb upstream 11511 true Chr04: 64555954-64567464 Sorghum bicolor
Sobic.004G307900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 64565465-64567464 Sorghum bicolor
Sobic.004G307900 2.0kb downstream 2.0kb downstream 11511 true Chr04: 64553954-64565464 Sorghum bicolor
Sobic.004G307900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 64553954-64555953 Sorghum bicolor
Sobic.004G307900 5.0kb upstream 5.0kb upstream 14511 true Chr04: 64555954-64570464 Sorghum bicolor
Sobic.004G307900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 64565465-64570464 Sorghum bicolor
Sobic.004G307900 5.0kb downstream 5.0kb downstream 14511 true Chr04: 64550954-64565464 Sorghum bicolor
Sobic.004G307900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 64550954-64555953 Sorghum bicolor
Sobic.004G307900 10.0kb upstream 10.0kb upstream 19511 true Chr04: 64555954-64575464 Sorghum bicolor
Sobic.004G307900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 64565465-64575464 Sorghum bicolor
Sobic.004G307900 10.0kb downstream 10.0kb downstream 19511 true Chr04: 64545954-64565464 Sorghum bicolor
Sobic.004G307900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 64545954-64555953 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195505 5267 Panicoideae View MSA
124570398 5269 Grass View MSA
122047052 5273 Angiosperm View MSA
121348350 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.138        
cufflinks 0.06       Low
cufflinks 0.072       Low
cufflinks 0.076       Low
cufflinks 0.877       High
cufflinks 0.09     Low Low
cufflinks 0.318        
cufflinks 0.074       Low
cufflinks 0.083       Low
cufflinks 0.213        
cufflinks 0.433        
cufflinks 0.357        
cufflinks 0.206        
cufflinks 0.452        
cufflinks 0.418        
cufflinks 0.092        
cufflinks 0.268        
cufflinks 0.321        
cufflinks 0.09     Low Low
cufflinks 0.201        
cufflinks 1.679       High
cufflinks 0.543        
cufflinks 0.501        
cufflinks 0.491        
cufflinks 0.09       Low
cufflinks 0.084       Low
cufflinks 0.193        
cufflinks 0.04     Low Low
cufflinks 0.123        
cufflinks 0.461        

0 Strain