Gene : Sobic.009G183300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11728//PTHR11728:SF14 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1895
Name:  ? Sobic.009G183300 Secondary Identifier:  ? PAC:37922208
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6118 Sorghum bicolor pathologic  
Sbicolor PWY-7411 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G183300 0.5kb upstream 0.5kb upstream 4412 true Chr09: 53671533-53675944 Sorghum bicolor
Sobic.009G183300 0.5kb upstream 0.5kb upstream 500 false Chr09: 53671533-53672032 Sorghum bicolor
Sobic.009G183300 0.5kb downstream 0.5kb downstream 4412 true Chr09: 53672033-53676444 Sorghum bicolor
Sobic.009G183300 0.5kb downstream 0.5kb downstream 500 false Chr09: 53675945-53676444 Sorghum bicolor
Sobic.009G183300 1.0kb upstream 1.0kb upstream 4912 true Chr09: 53671033-53675944 Sorghum bicolor
Sobic.009G183300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 53671033-53672032 Sorghum bicolor
Sobic.009G183300 1.0kb downstream 1.0kb downstream 4912 true Chr09: 53672033-53676944 Sorghum bicolor
Sobic.009G183300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 53675945-53676944 Sorghum bicolor
Sobic.009G183300 2.0kb upstream 2.0kb upstream 5912 true Chr09: 53670033-53675944 Sorghum bicolor
Sobic.009G183300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 53670033-53672032 Sorghum bicolor
Sobic.009G183300 2.0kb downstream 2.0kb downstream 5912 true Chr09: 53672033-53677944 Sorghum bicolor
Sobic.009G183300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 53675945-53677944 Sorghum bicolor
Sobic.009G183300 5.0kb upstream 5.0kb upstream 8912 true Chr09: 53667033-53675944 Sorghum bicolor
Sobic.009G183300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 53667033-53672032 Sorghum bicolor
Sobic.009G183300 5.0kb downstream 5.0kb downstream 8912 true Chr09: 53672033-53680944 Sorghum bicolor
Sobic.009G183300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 53675945-53680944 Sorghum bicolor
Sobic.009G183300 10.0kb upstream 10.0kb upstream 13912 true Chr09: 53662033-53675944 Sorghum bicolor
Sobic.009G183300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 53662033-53672032 Sorghum bicolor
Sobic.009G183300 10.0kb downstream 10.0kb downstream 13912 true Chr09: 53672033-53685944 Sorghum bicolor
Sobic.009G183300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 53675945-53685944 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993588 5273 Angiosperm View MSA
122196397 5267 Panicoideae View MSA
124579945 5269 Grass View MSA
121349677 5274 Embryophyte View MSA
123381397 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.013     High  
cufflinks 0.582       Low
cufflinks 9.276        
cufflinks 7.117        
cufflinks 10.22        
cufflinks 9.687        
cufflinks 3.957        
cufflinks 2.284       Low
cufflinks 10.559        
cufflinks 9.214        
cufflinks 22.24     High High
cufflinks 11.582        
cufflinks 18.145     High  
cufflinks 7.869        
cufflinks 16.886     High  
cufflinks 1.475       Low
cufflinks 4.639        
cufflinks 4.483        
cufflinks 4.535        
cufflinks 5.59        
cufflinks 3.615        
cufflinks 4.6        
cufflinks 9.204        
cufflinks 7.501        
cufflinks 0.585       Low
cufflinks 0.457       Low
cufflinks 48.494     High High
cufflinks 45.388     High High
cufflinks 5.477        
cufflinks 19.556     High  

0 Strain