Gene : Sobic.004G297500 S. bicolor v3.1.1
Defline:  (1 of 2) 4.2.1.18 - Methylglutaconyl-CoA hydratase Genomic Order:  3120
Name:  ? Sobic.004G297500 Secondary Identifier:  ? PAC:37932596
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LEU-DEG2-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G297500 0.5kb upstream 0.5kb upstream 4952 true Chr04: 63694316-63699267 Sorghum bicolor
Sobic.004G297500 0.5kb upstream 0.5kb upstream 500 false Chr04: 63698768-63699267 Sorghum bicolor
Sobic.004G297500 0.5kb downstream 0.5kb downstream 4952 true Chr04: 63693816-63698767 Sorghum bicolor
Sobic.004G297500 0.5kb downstream 0.5kb downstream 500 false Chr04: 63693816-63694315 Sorghum bicolor
Sobic.004G297500 1.0kb upstream 1.0kb upstream 5452 true Chr04: 63694316-63699767 Sorghum bicolor
Sobic.004G297500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 63698768-63699767 Sorghum bicolor
Sobic.004G297500 1.0kb downstream 1.0kb downstream 5452 true Chr04: 63693316-63698767 Sorghum bicolor
Sobic.004G297500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 63693316-63694315 Sorghum bicolor
Sobic.004G297500 2.0kb upstream 2.0kb upstream 6452 true Chr04: 63694316-63700767 Sorghum bicolor
Sobic.004G297500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 63698768-63700767 Sorghum bicolor
Sobic.004G297500 2.0kb downstream 2.0kb downstream 6452 true Chr04: 63692316-63698767 Sorghum bicolor
Sobic.004G297500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 63692316-63694315 Sorghum bicolor
Sobic.004G297500 5.0kb upstream 5.0kb upstream 9452 true Chr04: 63694316-63703767 Sorghum bicolor
Sobic.004G297500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 63698768-63703767 Sorghum bicolor
Sobic.004G297500 5.0kb downstream 5.0kb downstream 9452 true Chr04: 63689316-63698767 Sorghum bicolor
Sobic.004G297500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 63689316-63694315 Sorghum bicolor
Sobic.004G297500 10.0kb upstream 10.0kb upstream 14452 true Chr04: 63694316-63708767 Sorghum bicolor
Sobic.004G297500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 63698768-63708767 Sorghum bicolor
Sobic.004G297500 10.0kb downstream 10.0kb downstream 14452 true Chr04: 63684316-63698767 Sorghum bicolor
Sobic.004G297500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 63684316-63694315 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994710 5273 Angiosperm View MSA
122195926 5267 Panicoideae View MSA
124585375 5269 Grass View MSA
121264927 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.663       Low
cufflinks 0.972        
cufflinks 1.66        
cufflinks 5.663       High
cufflinks 3.364       High
cufflinks 4.19       High
cufflinks 1.571        
cufflinks 1.841        
cufflinks 3.085        
cufflinks 2.776        
cufflinks 0.336       Low
cufflinks 0.513       Low
cufflinks 1.353        
cufflinks 0.324       Low
cufflinks 2.964        
cufflinks 1.386        
cufflinks 1.72        
cufflinks 2.102        
cufflinks 1.966        
cufflinks 2.351        
cufflinks 5.495       High
cufflinks 0.928        
cufflinks 0.381       Low
cufflinks 0.577       Low
cufflinks 1.214        
cufflinks 1.011        
cufflinks 0.422       Low
cufflinks 2.357        
cufflinks 3.272        
cufflinks 3.744       High

0 Strain