Gene : Sobic.004G297400 S. bicolor v3.1.1
Defline:  (1 of 1) 4.2.1.116//4.2.1.18 - 3-hydroxypropionyl-CoA dehydratase / 3-hydroxypropionyl-CoA hydro-lyase // Methylglutaconyl-CoA hydratase Genomic Order:  3119
Name:  ? Sobic.004G297400 Secondary Identifier:  ? PAC:37931401
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor LEU-DEG2-PWY Sorghum bicolor pathologic  
Sbicolor PWY-7574 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G297400 0.5kb upstream 0.5kb upstream 4154 true Chr04: 63683622-63687775 Sorghum bicolor
Sobic.004G297400 0.5kb upstream 0.5kb upstream 500 false Chr04: 63687276-63687775 Sorghum bicolor
Sobic.004G297400 0.5kb downstream 0.5kb downstream 4154 true Chr04: 63683122-63687275 Sorghum bicolor
Sobic.004G297400 0.5kb downstream 0.5kb downstream 500 false Chr04: 63683122-63683621 Sorghum bicolor
Sobic.004G297400 1.0kb upstream 1.0kb upstream 4654 true Chr04: 63683622-63688275 Sorghum bicolor
Sobic.004G297400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 63687276-63688275 Sorghum bicolor
Sobic.004G297400 1.0kb downstream 1.0kb downstream 4654 true Chr04: 63682622-63687275 Sorghum bicolor
Sobic.004G297400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 63682622-63683621 Sorghum bicolor
Sobic.004G297400 2.0kb upstream 2.0kb upstream 5654 true Chr04: 63683622-63689275 Sorghum bicolor
Sobic.004G297400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 63687276-63689275 Sorghum bicolor
Sobic.004G297400 2.0kb downstream 2.0kb downstream 5654 true Chr04: 63681622-63687275 Sorghum bicolor
Sobic.004G297400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 63681622-63683621 Sorghum bicolor
Sobic.004G297400 5.0kb upstream 5.0kb upstream 8654 true Chr04: 63683622-63692275 Sorghum bicolor
Sobic.004G297400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 63687276-63692275 Sorghum bicolor
Sobic.004G297400 5.0kb downstream 5.0kb downstream 8654 true Chr04: 63678622-63687275 Sorghum bicolor
Sobic.004G297400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 63678622-63683621 Sorghum bicolor
Sobic.004G297400 10.0kb upstream 10.0kb upstream 13654 true Chr04: 63683622-63697275 Sorghum bicolor
Sobic.004G297400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 63687276-63697275 Sorghum bicolor
Sobic.004G297400 10.0kb downstream 10.0kb downstream 13654 true Chr04: 63673622-63687275 Sorghum bicolor
Sobic.004G297400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 63673622-63683621 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182924 5267 Panicoideae View MSA
124579335 5269 Grass View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.421        
cufflinks 0.021     Low Low
cufflinks 0.034     Low Low
cufflinks 0.143        
cufflinks 0.751        
cufflinks 1.44       High
cufflinks 0.259        
cufflinks 0.132        
cufflinks 0.383        
cufflinks 0.503        
cufflinks 0.441        
cufflinks 0.27        
cufflinks 0.595        
cufflinks 0.667        
cufflinks 0.835        
cufflinks 0.032     Low Low
cufflinks 0.286        
cufflinks 0.279        
cufflinks 0.094     Low Low
cufflinks 0.205        
cufflinks 1.08       High
cufflinks 0.898       High
cufflinks 0.305        
cufflinks 0.278        
cufflinks 0.041     Low Low
cufflinks 0.028     Low Low
cufflinks 0.339        
cufflinks 0.247        
cufflinks 0.334        
cufflinks 0.904       High

0 Strain