Gene : Sobic.010G001600 S. bicolor v3.1.1
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  16
Name:  ? Sobic.010G001600 Secondary Identifier:  ? PAC:37912355
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G001600 0.5kb upstream 0.5kb upstream 3526   true Chr10: 147458-150983 Sorghum bicolor
Sobic.010G001600 0.5kb upstream 0.5kb upstream 500   false Chr10: 150484-150983 Sorghum bicolor
Sobic.010G001600 0.5kb downstream 0.5kb downstream 3526   true Chr10: 146958-150483 Sorghum bicolor
Sobic.010G001600 0.5kb downstream 0.5kb downstream 500   false Chr10: 146958-147457 Sorghum bicolor
Sobic.010G001600 1.0kb upstream 1.0kb upstream 4026   true Chr10: 147458-151483 Sorghum bicolor
Sobic.010G001600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 150484-151483 Sorghum bicolor
Sobic.010G001600 1.0kb downstream 1.0kb downstream 4026   true Chr10: 146458-150483 Sorghum bicolor
Sobic.010G001600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 146458-147457 Sorghum bicolor
Sobic.010G001600 2.0kb upstream 2.0kb upstream 5026   true Chr10: 147458-152483 Sorghum bicolor
Sobic.010G001600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 150484-152483 Sorghum bicolor
Sobic.010G001600 2.0kb downstream 2.0kb downstream 5026   true Chr10: 145458-150483 Sorghum bicolor
Sobic.010G001600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 145458-147457 Sorghum bicolor
Sobic.010G001600 5.0kb upstream 5.0kb upstream 8026   true Chr10: 147458-155483 Sorghum bicolor
Sobic.010G001600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 150484-155483 Sorghum bicolor
Sobic.010G001600 5.0kb downstream 5.0kb downstream 8026   true Chr10: 142458-150483 Sorghum bicolor
Sobic.010G001600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 142458-147457 Sorghum bicolor
Sobic.010G001600 10.0kb upstream 10.0kb upstream 13026   true Chr10: 147458-160483 Sorghum bicolor
Sobic.010G001600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 150484-160483 Sorghum bicolor
Sobic.010G001600 10.0kb downstream 10.0kb downstream 13026   true Chr10: 137458-150483 Sorghum bicolor
Sobic.010G001600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 137458-147457 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178132 5267 Panicoideae View MSA
124584432 5269 Grass View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.413       Low
cufflinks 3.467       Low
cufflinks 9.812     High  
cufflinks 13.049     High  
cufflinks 25.099     High High
cufflinks 28.815     High High
cufflinks 7.228        
cufflinks 10.567     High  
cufflinks 23.633     High High
cufflinks 21.383     High  
cufflinks 10.598        
cufflinks 9.096        
cufflinks 14.325     High  
cufflinks 9.133        
cufflinks 12.674     High  
cufflinks 13.238     High  
cufflinks 5.492       Low
cufflinks 6.363        
cufflinks 36.652     High High
cufflinks 5.466       Low
cufflinks 38.104     High High
cufflinks 9.78        
cufflinks 6.346        
cufflinks 7.675        
cufflinks 7.593        
cufflinks 4.651       Low
cufflinks 12.546     High  
cufflinks 131.994     High High
cufflinks 9.452        
cufflinks 11.295        

0 Strain