Gene : Sobic.010G012900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11404//PTHR11404:SF8 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 1, CHLOROPLASTIC Genomic Order:  128
Name:  ? Sobic.010G012900 Secondary Identifier:  ? PAC:37912111
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor DETOX1-PWY Sorghum bicolor pathologic  
Sbicolor DETOX1-PWY-1 Sorghum bicolor pathologic  
Sbicolor PWY-6854 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G012900 0.5kb upstream 0.5kb upstream 3228   true Chr10: 1084569-1087796 Sorghum bicolor
Sobic.010G012900 0.5kb upstream 0.5kb upstream 500   false Chr10: 1087297-1087796 Sorghum bicolor
Sobic.010G012900 0.5kb downstream 0.5kb downstream 3228   true Chr10: 1084069-1087296 Sorghum bicolor
Sobic.010G012900 0.5kb downstream 0.5kb downstream 500   false Chr10: 1084069-1084568 Sorghum bicolor
Sobic.010G012900 1.0kb upstream 1.0kb upstream 3728   true Chr10: 1084569-1088296 Sorghum bicolor
Sobic.010G012900 1.0kb upstream 1.0kb upstream 1000   false Chr10: 1087297-1088296 Sorghum bicolor
Sobic.010G012900 1.0kb downstream 1.0kb downstream 3728   true Chr10: 1083569-1087296 Sorghum bicolor
Sobic.010G012900 1.0kb downstream 1.0kb downstream 1000   false Chr10: 1083569-1084568 Sorghum bicolor
Sobic.010G012900 2.0kb upstream 2.0kb upstream 4728   true Chr10: 1084569-1089296 Sorghum bicolor
Sobic.010G012900 2.0kb upstream 2.0kb upstream 2000   false Chr10: 1087297-1089296 Sorghum bicolor
Sobic.010G012900 2.0kb downstream 2.0kb downstream 4728   true Chr10: 1082569-1087296 Sorghum bicolor
Sobic.010G012900 2.0kb downstream 2.0kb downstream 2000   false Chr10: 1082569-1084568 Sorghum bicolor
Sobic.010G012900 5.0kb upstream 5.0kb upstream 7728   true Chr10: 1084569-1092296 Sorghum bicolor
Sobic.010G012900 5.0kb upstream 5.0kb upstream 5000   false Chr10: 1087297-1092296 Sorghum bicolor
Sobic.010G012900 5.0kb downstream 5.0kb downstream 7728   true Chr10: 1079569-1087296 Sorghum bicolor
Sobic.010G012900 5.0kb downstream 5.0kb downstream 5000   false Chr10: 1079569-1084568 Sorghum bicolor
Sobic.010G012900 10.0kb upstream 10.0kb upstream 12728   true Chr10: 1084569-1097296 Sorghum bicolor
Sobic.010G012900 10.0kb upstream 10.0kb upstream 10000   false Chr10: 1087297-1097296 Sorghum bicolor
Sobic.010G012900 10.0kb downstream 10.0kb downstream 12728   true Chr10: 1074569-1087296 Sorghum bicolor
Sobic.010G012900 10.0kb downstream 10.0kb downstream 10000   false Chr10: 1074569-1084568 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186400 5267 Panicoideae View MSA
124572177 5269 Grass View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.022        
cufflinks 0.599       Low
cufflinks 3.853        
cufflinks 5.185        
cufflinks 11.819        
cufflinks 7.249        
cufflinks 14.633     High High
cufflinks 8.386        
cufflinks 6.254        
cufflinks 6.373        
cufflinks 2.329        
cufflinks 2.511        
cufflinks 6.618        
cufflinks 2.874        
cufflinks 5.769        
cufflinks 2.117        
cufflinks 15.5     High High
cufflinks 18.002     High High
cufflinks 2.668        
cufflinks 7.809        
cufflinks 19.841     High High
cufflinks 3.297        
cufflinks 3.52        
cufflinks 3.419        
cufflinks 1.355       Low
cufflinks 0.622       Low
cufflinks 2.412        
cufflinks 0.334       Low
cufflinks 42.061     High High
cufflinks 10.143        

0 Strain