Gene : Sobic.004G333800 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.205 - tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase Genomic Order:  3503
Name:  ? Sobic.004G333800 Secondary Identifier:  ? PAC:37933088
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6829 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G333800 0.5kb upstream 0.5kb upstream 3343 true Chr04: 66638769-66642111 Sorghum bicolor
Sobic.004G333800 0.5kb upstream 0.5kb upstream 500 false Chr04: 66641612-66642111 Sorghum bicolor
Sobic.004G333800 0.5kb downstream 0.5kb downstream 3343 true Chr04: 66638269-66641611 Sorghum bicolor
Sobic.004G333800 0.5kb downstream 0.5kb downstream 500 false Chr04: 66638269-66638768 Sorghum bicolor
Sobic.004G333800 1.0kb upstream 1.0kb upstream 3843 true Chr04: 66638769-66642611 Sorghum bicolor
Sobic.004G333800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 66641612-66642611 Sorghum bicolor
Sobic.004G333800 1.0kb downstream 1.0kb downstream 3843 true Chr04: 66637769-66641611 Sorghum bicolor
Sobic.004G333800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 66637769-66638768 Sorghum bicolor
Sobic.004G333800 2.0kb upstream 2.0kb upstream 4843 true Chr04: 66638769-66643611 Sorghum bicolor
Sobic.004G333800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 66641612-66643611 Sorghum bicolor
Sobic.004G333800 2.0kb downstream 2.0kb downstream 4843 true Chr04: 66636769-66641611 Sorghum bicolor
Sobic.004G333800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 66636769-66638768 Sorghum bicolor
Sobic.004G333800 5.0kb upstream 5.0kb upstream 7843 true Chr04: 66638769-66646611 Sorghum bicolor
Sobic.004G333800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 66641612-66646611 Sorghum bicolor
Sobic.004G333800 5.0kb downstream 5.0kb downstream 7843 true Chr04: 66633769-66641611 Sorghum bicolor
Sobic.004G333800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 66633769-66638768 Sorghum bicolor
Sobic.004G333800 10.0kb upstream 10.0kb upstream 12843 true Chr04: 66638769-66651611 Sorghum bicolor
Sobic.004G333800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 66641612-66651611 Sorghum bicolor
Sobic.004G333800 10.0kb downstream 10.0kb downstream 12843 true Chr04: 66628769-66641611 Sorghum bicolor
Sobic.004G333800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 66628769-66638768 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184350 5267 Panicoideae View MSA
124575975 5269 Grass View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.655     High High
cufflinks 5.193       Low
cufflinks 11.043     High  
cufflinks 14.654     High  
cufflinks 12.891     High  
cufflinks 25.015     High High
cufflinks 6.585        
cufflinks 2.219       Low
cufflinks 18.198     High High
cufflinks 14.347     High  
cufflinks 6.022        
cufflinks 8.514        
cufflinks 9.494        
cufflinks 7.688        
cufflinks 9.88        
cufflinks 8.015        
cufflinks 5.385       Low
cufflinks 5.846        
cufflinks 9.79        
cufflinks 7.331        
cufflinks 21.041     High High
cufflinks 8.982        
cufflinks 6.997        
cufflinks 8.255        
cufflinks 8.041        
cufflinks 4.004       Low
cufflinks 10.01        
cufflinks 25.448     High High
cufflinks 3.778       Low
cufflinks 9.605        

0 Strain