Gene : Sobic.004G330600 S. bicolor v3.1.1
Defline:  (1 of 1) 4.1.1.33 - Diphosphomevalonate decarboxylase / Mevalonate pyrophosphate decarboxylase Genomic Order:  3470
Name:  ? Sobic.004G330600 Secondary Identifier:  ? PAC:37931692
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5910 Sorghum bicolor pathologic  
Sbicolor PWY-922 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.004G330600 0.5kb upstream 0.5kb upstream 4955 true Chr04: 66394752-66399706 Sorghum bicolor
Sobic.004G330600 0.5kb upstream 0.5kb upstream 500 false Chr04: 66394752-66395251 Sorghum bicolor
Sobic.004G330600 0.5kb downstream 0.5kb downstream 4955 true Chr04: 66395252-66400206 Sorghum bicolor
Sobic.004G330600 0.5kb downstream 0.5kb downstream 500 false Chr04: 66399707-66400206 Sorghum bicolor
Sobic.004G330600 1.0kb upstream 1.0kb upstream 5455 true Chr04: 66394252-66399706 Sorghum bicolor
Sobic.004G330600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 66394252-66395251 Sorghum bicolor
Sobic.004G330600 1.0kb downstream 1.0kb downstream 5455 true Chr04: 66395252-66400706 Sorghum bicolor
Sobic.004G330600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 66399707-66400706 Sorghum bicolor
Sobic.004G330600 2.0kb upstream 2.0kb upstream 6455 true Chr04: 66393252-66399706 Sorghum bicolor
Sobic.004G330600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 66393252-66395251 Sorghum bicolor
Sobic.004G330600 2.0kb downstream 2.0kb downstream 6455 true Chr04: 66395252-66401706 Sorghum bicolor
Sobic.004G330600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 66399707-66401706 Sorghum bicolor
Sobic.004G330600 5.0kb upstream 5.0kb upstream 9455 true Chr04: 66390252-66399706 Sorghum bicolor
Sobic.004G330600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 66390252-66395251 Sorghum bicolor
Sobic.004G330600 5.0kb downstream 5.0kb downstream 9455 true Chr04: 66395252-66404706 Sorghum bicolor
Sobic.004G330600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 66399707-66404706 Sorghum bicolor
Sobic.004G330600 10.0kb upstream 10.0kb upstream 14455 true Chr04: 66385252-66399706 Sorghum bicolor
Sobic.004G330600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 66385252-66395251 Sorghum bicolor
Sobic.004G330600 10.0kb downstream 10.0kb downstream 14455 true Chr04: 66395252-66409706 Sorghum bicolor
Sobic.004G330600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 66399707-66409706 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040965 5273 Angiosperm View MSA
122177408 5267 Panicoideae View MSA
124575988 5269 Grass View MSA
121347307 5274 Embryophyte View MSA
123380524 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.943     High  
cufflinks 1.846       Low
cufflinks 7.347        
cufflinks 8.072        
cufflinks 16.897     High  
cufflinks 9.776        
cufflinks 12.903     High  
cufflinks 4.65       Low
cufflinks 14.168     High  
cufflinks 12.457     High  
cufflinks 20.06     High  
cufflinks 18.312     High  
cufflinks 7.551        
cufflinks 16.429     High  
cufflinks 10.762        
cufflinks 4.407       Low
cufflinks 12.921     High  
cufflinks 13.455     High  
cufflinks 5.344       Low
cufflinks 15.254     High  
cufflinks 15.889     High  
cufflinks 27.904     High High
cufflinks 23.093     High  
cufflinks 24.149     High High
cufflinks 4.289       Low
cufflinks 1.221       Low
cufflinks 12.526     High  
cufflinks 4.183       Low
cufflinks 10.022        
cufflinks 26.208     High High

0 Strain