Gene : Sobic.010G021800 S. bicolor v3.1.1
Defline:  (1 of 1) K01583 - arginine decarboxylase (E4.1.1.19) Genomic Order:  216
Name:  ? Sobic.010G021800 Secondary Identifier:  ? PAC:37910119
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor POLYAMINSYN3-PWY Sorghum bicolor pathologic  
Sbicolor PWY-43 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G021800 0.5kb upstream 0.5kb upstream 3734   true Chr10: 1745744-1749477 Sorghum bicolor
Sobic.010G021800 0.5kb upstream 0.5kb upstream 500   false Chr10: 1748978-1749477 Sorghum bicolor
Sobic.010G021800 0.5kb downstream 0.5kb downstream 3734   true Chr10: 1745244-1748977 Sorghum bicolor
Sobic.010G021800 0.5kb downstream 0.5kb downstream 500   false Chr10: 1745244-1745743 Sorghum bicolor
Sobic.010G021800 1.0kb upstream 1.0kb upstream 4234   true Chr10: 1745744-1749977 Sorghum bicolor
Sobic.010G021800 1.0kb upstream 1.0kb upstream 1000   false Chr10: 1748978-1749977 Sorghum bicolor
Sobic.010G021800 1.0kb downstream 1.0kb downstream 4234   true Chr10: 1744744-1748977 Sorghum bicolor
Sobic.010G021800 1.0kb downstream 1.0kb downstream 1000   false Chr10: 1744744-1745743 Sorghum bicolor
Sobic.010G021800 2.0kb upstream 2.0kb upstream 5234   true Chr10: 1745744-1750977 Sorghum bicolor
Sobic.010G021800 2.0kb upstream 2.0kb upstream 2000   false Chr10: 1748978-1750977 Sorghum bicolor
Sobic.010G021800 2.0kb downstream 2.0kb downstream 5234   true Chr10: 1743744-1748977 Sorghum bicolor
Sobic.010G021800 2.0kb downstream 2.0kb downstream 2000   false Chr10: 1743744-1745743 Sorghum bicolor
Sobic.010G021800 5.0kb upstream 5.0kb upstream 8234   true Chr10: 1745744-1753977 Sorghum bicolor
Sobic.010G021800 5.0kb upstream 5.0kb upstream 5000   false Chr10: 1748978-1753977 Sorghum bicolor
Sobic.010G021800 5.0kb downstream 5.0kb downstream 8234   true Chr10: 1740744-1748977 Sorghum bicolor
Sobic.010G021800 5.0kb downstream 5.0kb downstream 5000   false Chr10: 1740744-1745743 Sorghum bicolor
Sobic.010G021800 10.0kb upstream 10.0kb upstream 13234   true Chr10: 1745744-1758977 Sorghum bicolor
Sobic.010G021800 10.0kb upstream 10.0kb upstream 10000   false Chr10: 1748978-1758977 Sorghum bicolor
Sobic.010G021800 10.0kb downstream 10.0kb downstream 13234   true Chr10: 1735744-1748977 Sorghum bicolor
Sobic.010G021800 10.0kb downstream 10.0kb downstream 10000   false Chr10: 1735744-1745743 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179487 5267 Panicoideae View MSA
124575021 5269 Grass View MSA
122046464 5273 Angiosperm View MSA
121350786 5274 Embryophyte View MSA
123424715 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.738     High  
cufflinks 80.843     High High
cufflinks 32.988     High  
cufflinks 18.989     High  
cufflinks 24.328     High  
cufflinks 34.402     High  
cufflinks 38.925     High  
cufflinks 46.242     High High
cufflinks 4.549       Low
cufflinks 4.161       Low
cufflinks 9.966        
cufflinks 7.429       Low
cufflinks 15.733     High  
cufflinks 14.204     High  
cufflinks 44.443     High  
cufflinks 16.527     High  
cufflinks 27.288     High  
cufflinks 28.28     High  
cufflinks 156.154     High High
cufflinks 11.111        
cufflinks 13.202        
cufflinks 12.114     High  
cufflinks 9.593        
cufflinks 9.513        
cufflinks 85.052     High High
cufflinks 68.363     High High
cufflinks 9.14        
cufflinks 6.196       Low
cufflinks 45.46     High High
cufflinks 52.933     High High

0 Strain