Gene : Sobic.010G023800 S. bicolor v3.1.1
Defline:  (1 of 1) 2.5.1.19 - 3-phosphoshikimate 1-carboxyvinyltransferase / EPSP synthase Genomic Order:  240
Name:  ? Sobic.010G023800 Secondary Identifier:  ? PAC:37910319
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-6163 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G023800 0.5kb upstream 0.5kb upstream 4588   true Chr10: 1978969-1983556 Sorghum bicolor
Sobic.010G023800 0.5kb upstream 0.5kb upstream 500   false Chr10: 1978969-1979468 Sorghum bicolor
Sobic.010G023800 0.5kb downstream 0.5kb downstream 4588   true Chr10: 1979469-1984056 Sorghum bicolor
Sobic.010G023800 0.5kb downstream 0.5kb downstream 500   false Chr10: 1983557-1984056 Sorghum bicolor
Sobic.010G023800 1.0kb upstream 1.0kb upstream 5088   true Chr10: 1978469-1983556 Sorghum bicolor
Sobic.010G023800 1.0kb upstream 1.0kb upstream 1000   false Chr10: 1978469-1979468 Sorghum bicolor
Sobic.010G023800 1.0kb downstream 1.0kb downstream 5088   true Chr10: 1979469-1984556 Sorghum bicolor
Sobic.010G023800 1.0kb downstream 1.0kb downstream 1000   false Chr10: 1983557-1984556 Sorghum bicolor
Sobic.010G023800 2.0kb upstream 2.0kb upstream 6088   true Chr10: 1977469-1983556 Sorghum bicolor
Sobic.010G023800 2.0kb upstream 2.0kb upstream 2000   false Chr10: 1977469-1979468 Sorghum bicolor
Sobic.010G023800 2.0kb downstream 2.0kb downstream 6088   true Chr10: 1979469-1985556 Sorghum bicolor
Sobic.010G023800 2.0kb downstream 2.0kb downstream 2000   false Chr10: 1983557-1985556 Sorghum bicolor
Sobic.010G023800 5.0kb upstream 5.0kb upstream 9088   true Chr10: 1974469-1983556 Sorghum bicolor
Sobic.010G023800 5.0kb upstream 5.0kb upstream 5000   false Chr10: 1974469-1979468 Sorghum bicolor
Sobic.010G023800 5.0kb downstream 5.0kb downstream 9088   true Chr10: 1979469-1988556 Sorghum bicolor
Sobic.010G023800 5.0kb downstream 5.0kb downstream 5000   false Chr10: 1983557-1988556 Sorghum bicolor
Sobic.010G023800 10.0kb upstream 10.0kb upstream 14088   true Chr10: 1969469-1983556 Sorghum bicolor
Sobic.010G023800 10.0kb upstream 10.0kb upstream 10000   false Chr10: 1969469-1979468 Sorghum bicolor
Sobic.010G023800 10.0kb downstream 10.0kb downstream 14088   true Chr10: 1979469-1993556 Sorghum bicolor
Sobic.010G023800 10.0kb downstream 10.0kb downstream 10000   false Chr10: 1983557-1993556 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193223 5267 Panicoideae View MSA
124574120 5269 Grass View MSA
122041964 5273 Angiosperm View MSA
121345789 5274 Embryophyte View MSA
123424749 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 98.824     High High
cufflinks 16.872     High Low
cufflinks 19.15     High Low
cufflinks 22.336     High Low
cufflinks 48.827     High  
cufflinks 17.884     High Low
cufflinks 65.827     High  
cufflinks 39.515     High  
cufflinks 29.045     High  
cufflinks 32.359     High  
cufflinks 70.202     High  
cufflinks 67.575     High  
cufflinks 143.7     High High
cufflinks 74.663     High  
cufflinks 41.672     High  
cufflinks 19.141     High Low
cufflinks 64.935     High  
cufflinks 61.698     High  
cufflinks 25.346     High  
cufflinks 59.173     High  
cufflinks 23.673     High Low
cufflinks 60.148     High  
cufflinks 71.962     High  
cufflinks 74.708     High  
cufflinks 13.199     High Low
cufflinks 12.652     High Low
cufflinks 62.602     High  
cufflinks 29.188     High  
cufflinks 68.8     High  
cufflinks 46.468     High  

0 Strain