Gene : Sobic.009G239900 S. bicolor v3.1.1
Defline:  (1 of 2) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  2479
Name:  ? Sobic.009G239900 Secondary Identifier:  ? PAC:37921042
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor BRANCHED-CHAIN-AA-SYN-PWY Sorghum bicolor pathologic  
Sbicolor ILEUSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  
Sbicolor VALSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G239900 0.5kb upstream 0.5kb upstream 3977 true Chr09: 57760417-57764393 Sorghum bicolor
Sobic.009G239900 0.5kb upstream 0.5kb upstream 500 false Chr09: 57763894-57764393 Sorghum bicolor
Sobic.009G239900 0.5kb downstream 0.5kb downstream 3977 true Chr09: 57759917-57763893 Sorghum bicolor
Sobic.009G239900 0.5kb downstream 0.5kb downstream 500 false Chr09: 57759917-57760416 Sorghum bicolor
Sobic.009G239900 1.0kb upstream 1.0kb upstream 4477 true Chr09: 57760417-57764893 Sorghum bicolor
Sobic.009G239900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 57763894-57764893 Sorghum bicolor
Sobic.009G239900 1.0kb downstream 1.0kb downstream 4477 true Chr09: 57759417-57763893 Sorghum bicolor
Sobic.009G239900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 57759417-57760416 Sorghum bicolor
Sobic.009G239900 2.0kb upstream 2.0kb upstream 5477 true Chr09: 57760417-57765893 Sorghum bicolor
Sobic.009G239900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 57763894-57765893 Sorghum bicolor
Sobic.009G239900 2.0kb downstream 2.0kb downstream 5477 true Chr09: 57758417-57763893 Sorghum bicolor
Sobic.009G239900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 57758417-57760416 Sorghum bicolor
Sobic.009G239900 5.0kb upstream 5.0kb upstream 8477 true Chr09: 57760417-57768893 Sorghum bicolor
Sobic.009G239900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 57763894-57768893 Sorghum bicolor
Sobic.009G239900 5.0kb downstream 5.0kb downstream 8477 true Chr09: 57755417-57763893 Sorghum bicolor
Sobic.009G239900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 57755417-57760416 Sorghum bicolor
Sobic.009G239900 10.0kb upstream 10.0kb upstream 13477 true Chr09: 57760417-57773893 Sorghum bicolor
Sobic.009G239900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 57763894-57773893 Sorghum bicolor
Sobic.009G239900 10.0kb downstream 10.0kb downstream 13477 true Chr09: 57750417-57763893 Sorghum bicolor
Sobic.009G239900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 57750417-57760416 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197042 5267 Panicoideae View MSA
124580502 5269 Grass View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.211     High  
cufflinks 25.538     High Low
cufflinks 32.441     High  
cufflinks 32.361     High  
cufflinks 48.497     High  
cufflinks 47.389     High  
cufflinks 63.463     High  
cufflinks 82.677     High High
cufflinks 49.1     High  
cufflinks 58.955     High  
cufflinks 50.063     High  
cufflinks 38.033     High  
cufflinks 47.213     High  
cufflinks 68.272     High  
cufflinks 70.498     High  
cufflinks 38.597     High  
cufflinks 61.66     High  
cufflinks 71.849     High  
cufflinks 47.141     High  
cufflinks 33.051     High  
cufflinks 74.304     High  
cufflinks 42.402     High  
cufflinks 46.337     High  
cufflinks 49.186     High  
cufflinks 11.831     High Low
cufflinks 20.075     High Low
cufflinks 66.859     High  
cufflinks 37.102     High  
cufflinks 151.508     High High
cufflinks 111.978     High High

0 Strain