Gene : Sobic.009G246400 S. bicolor v3.1.1
Defline:  (1 of 2) K05356 - all-trans-nonaprenyl-diphosphate synthase (SPS, sds) Genomic Order:  2546
Name:  ? Sobic.009G246400 Secondary Identifier:  ? PAC:37920187
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5805 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.009G246400 0.5kb upstream 0.5kb upstream 5833 true Chr09: 58197873-58203705 Sorghum bicolor
Sobic.009G246400 0.5kb upstream 0.5kb upstream 500 false Chr09: 58203206-58203705 Sorghum bicolor
Sobic.009G246400 0.5kb downstream 0.5kb downstream 5833 true Chr09: 58197373-58203205 Sorghum bicolor
Sobic.009G246400 0.5kb downstream 0.5kb downstream 500 false Chr09: 58197373-58197872 Sorghum bicolor
Sobic.009G246400 1.0kb upstream 1.0kb upstream 6333 true Chr09: 58197873-58204205 Sorghum bicolor
Sobic.009G246400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 58203206-58204205 Sorghum bicolor
Sobic.009G246400 1.0kb downstream 1.0kb downstream 6333 true Chr09: 58196873-58203205 Sorghum bicolor
Sobic.009G246400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 58196873-58197872 Sorghum bicolor
Sobic.009G246400 2.0kb upstream 2.0kb upstream 7333 true Chr09: 58197873-58205205 Sorghum bicolor
Sobic.009G246400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 58203206-58205205 Sorghum bicolor
Sobic.009G246400 2.0kb downstream 2.0kb downstream 7333 true Chr09: 58195873-58203205 Sorghum bicolor
Sobic.009G246400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 58195873-58197872 Sorghum bicolor
Sobic.009G246400 5.0kb upstream 5.0kb upstream 10333 true Chr09: 58197873-58208205 Sorghum bicolor
Sobic.009G246400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 58203206-58208205 Sorghum bicolor
Sobic.009G246400 5.0kb downstream 5.0kb downstream 10333 true Chr09: 58192873-58203205 Sorghum bicolor
Sobic.009G246400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 58192873-58197872 Sorghum bicolor
Sobic.009G246400 10.0kb upstream 10.0kb upstream 15333 true Chr09: 58197873-58213205 Sorghum bicolor
Sobic.009G246400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 58203206-58213205 Sorghum bicolor
Sobic.009G246400 10.0kb downstream 10.0kb downstream 15333 true Chr09: 58187873-58203205 Sorghum bicolor
Sobic.009G246400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 58187873-58197872 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122193425 5267 Panicoideae View MSA
124574898 5269 Grass View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.453        
cufflinks 61.155     High High
cufflinks 34.46     High High
cufflinks 21.821     High High
cufflinks 1.826       Low
cufflinks 9.802        
cufflinks 25.707     High High
cufflinks 11.238     High  
cufflinks 7.311        
cufflinks 8.784        
cufflinks 2.297        
cufflinks 4.471        
cufflinks 6.619        
cufflinks 2.804        
cufflinks 5.586        
cufflinks 35.013     High High
cufflinks 28.244     High High
cufflinks 20.496     High High
cufflinks 8.813        
cufflinks 46.316     High High
cufflinks 2.196        
cufflinks 2.135        
cufflinks 3.014        
cufflinks 3.308        
cufflinks 42.997     High High
cufflinks 46.816     High High
cufflinks 2.015       Low
cufflinks 5.77        
cufflinks 5.744        
cufflinks 4.313        

0 Strain