Gene : Sobic.010G047700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  481
Name:  ? Sobic.010G047700 Secondary Identifier:  ? PAC:37912257
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYCOGENSYNTH-PWY Sorghum bicolor pathologic  
Sbicolor PWY-622 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G047700 0.5kb upstream 0.5kb upstream 9179   true Chr10: 3694262-3703440 Sorghum bicolor
Sobic.010G047700 0.5kb upstream 0.5kb upstream 500   false Chr10: 3702941-3703440 Sorghum bicolor
Sobic.010G047700 0.5kb downstream 0.5kb downstream 9179   true Chr10: 3693762-3702940 Sorghum bicolor
Sobic.010G047700 0.5kb downstream 0.5kb downstream 500   false Chr10: 3693762-3694261 Sorghum bicolor
Sobic.010G047700 1.0kb upstream 1.0kb upstream 9679   true Chr10: 3694262-3703940 Sorghum bicolor
Sobic.010G047700 1.0kb upstream 1.0kb upstream 1000   false Chr10: 3702941-3703940 Sorghum bicolor
Sobic.010G047700 1.0kb downstream 1.0kb downstream 9679   true Chr10: 3693262-3702940 Sorghum bicolor
Sobic.010G047700 1.0kb downstream 1.0kb downstream 1000   false Chr10: 3693262-3694261 Sorghum bicolor
Sobic.010G047700 2.0kb upstream 2.0kb upstream 10679   true Chr10: 3694262-3704940 Sorghum bicolor
Sobic.010G047700 2.0kb upstream 2.0kb upstream 2000   false Chr10: 3702941-3704940 Sorghum bicolor
Sobic.010G047700 2.0kb downstream 2.0kb downstream 10679   true Chr10: 3692262-3702940 Sorghum bicolor
Sobic.010G047700 2.0kb downstream 2.0kb downstream 2000   false Chr10: 3692262-3694261 Sorghum bicolor
Sobic.010G047700 5.0kb upstream 5.0kb upstream 13679   true Chr10: 3694262-3707940 Sorghum bicolor
Sobic.010G047700 5.0kb upstream 5.0kb upstream 5000   false Chr10: 3702941-3707940 Sorghum bicolor
Sobic.010G047700 5.0kb downstream 5.0kb downstream 13679   true Chr10: 3689262-3702940 Sorghum bicolor
Sobic.010G047700 5.0kb downstream 5.0kb downstream 5000   false Chr10: 3689262-3694261 Sorghum bicolor
Sobic.010G047700 10.0kb upstream 10.0kb upstream 18679   true Chr10: 3694262-3712940 Sorghum bicolor
Sobic.010G047700 10.0kb upstream 10.0kb upstream 10000   false Chr10: 3702941-3712940 Sorghum bicolor
Sobic.010G047700 10.0kb downstream 10.0kb downstream 18679   true Chr10: 3684262-3702940 Sorghum bicolor
Sobic.010G047700 10.0kb downstream 10.0kb downstream 10000   false Chr10: 3684262-3694261 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186416 5267 Panicoideae View MSA
124573118 5269 Grass View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.214     High  
cufflinks 59.653     High High
cufflinks 6.225        
cufflinks 13.466     High  
cufflinks 8.093        
cufflinks 5.792        
cufflinks 29.775     High  
cufflinks 56.762     High High
cufflinks 26.308     High  
cufflinks 24.63     High  
cufflinks 0.902       Low
cufflinks 0.713       Low
cufflinks 6.687        
cufflinks 0.761       Low
cufflinks 15.937     High  
cufflinks 17.413     High  
cufflinks 41.432     High High
cufflinks 25.016     High  
cufflinks 8.329        
cufflinks 43.485     High High
cufflinks 6.075        
cufflinks 0.942       Low
cufflinks 1.022       Low
cufflinks 1.145       Low
cufflinks 71.569     High High
cufflinks 133.953     High High
cufflinks 0.25       Low
cufflinks 29.74     High  
cufflinks 9.903        
cufflinks 21.022     High  

0 Strain