Gene : Sobic.010G050200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10209//PTHR10209:SF226 - OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN // 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN Genomic Order:  508
Name:  ? Sobic.010G050200 Secondary Identifier:  ? PAC:37910790
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-3101 Sorghum bicolor pathologic  
Sbicolor PWY-5390 Sorghum bicolor pathologic  
Sbicolor PWY-5391 Sorghum bicolor pathologic  
Sbicolor PWY-6787 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G050200 0.5kb upstream 0.5kb upstream 5216   true Chr10: 3864956-3870171 Sorghum bicolor
Sobic.010G050200 0.5kb upstream 0.5kb upstream 500   false Chr10: 3864956-3865455 Sorghum bicolor
Sobic.010G050200 0.5kb downstream 0.5kb downstream 5216   true Chr10: 3865456-3870671 Sorghum bicolor
Sobic.010G050200 0.5kb downstream 0.5kb downstream 500   false Chr10: 3870172-3870671 Sorghum bicolor
Sobic.010G050200 1.0kb upstream 1.0kb upstream 5716   true Chr10: 3864456-3870171 Sorghum bicolor
Sobic.010G050200 1.0kb upstream 1.0kb upstream 1000   false Chr10: 3864456-3865455 Sorghum bicolor
Sobic.010G050200 1.0kb downstream 1.0kb downstream 5716   true Chr10: 3865456-3871171 Sorghum bicolor
Sobic.010G050200 1.0kb downstream 1.0kb downstream 1000   false Chr10: 3870172-3871171 Sorghum bicolor
Sobic.010G050200 2.0kb upstream 2.0kb upstream 6716   true Chr10: 3863456-3870171 Sorghum bicolor
Sobic.010G050200 2.0kb upstream 2.0kb upstream 2000   false Chr10: 3863456-3865455 Sorghum bicolor
Sobic.010G050200 2.0kb downstream 2.0kb downstream 6716   true Chr10: 3865456-3872171 Sorghum bicolor
Sobic.010G050200 2.0kb downstream 2.0kb downstream 2000   false Chr10: 3870172-3872171 Sorghum bicolor
Sobic.010G050200 5.0kb upstream 5.0kb upstream 9716   true Chr10: 3860456-3870171 Sorghum bicolor
Sobic.010G050200 5.0kb upstream 5.0kb upstream 5000   false Chr10: 3860456-3865455 Sorghum bicolor
Sobic.010G050200 5.0kb downstream 5.0kb downstream 9716   true Chr10: 3865456-3875171 Sorghum bicolor
Sobic.010G050200 5.0kb downstream 5.0kb downstream 5000   false Chr10: 3870172-3875171 Sorghum bicolor
Sobic.010G050200 10.0kb upstream 10.0kb upstream 14716   true Chr10: 3855456-3870171 Sorghum bicolor
Sobic.010G050200 10.0kb upstream 10.0kb upstream 10000   false Chr10: 3855456-3865455 Sorghum bicolor
Sobic.010G050200 10.0kb downstream 10.0kb downstream 14716   true Chr10: 3865456-3880171 Sorghum bicolor
Sobic.010G050200 10.0kb downstream 10.0kb downstream 10000   false Chr10: 3870172-3880171 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026742 5273 Angiosperm View MSA
122177565 5267 Panicoideae View MSA
124580358 5269 Grass View MSA
121347125 5274 Embryophyte View MSA
123380497 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.987       High
cufflinks 0.925       Low
cufflinks 0.98        
cufflinks 1.728        
cufflinks 1.049        
cufflinks 2.174        
cufflinks 0.952       Low
cufflinks 1.305        
cufflinks 1.952        
cufflinks 1.82        
cufflinks 1.837        
cufflinks 2.212        
cufflinks 1.186        
cufflinks 2.377       High
cufflinks 1.949        
cufflinks 1.388        
cufflinks 1.052        
cufflinks 0.987        
cufflinks 0.853       Low
cufflinks 1.079        
cufflinks 1.708        
cufflinks 1.787        
cufflinks 1.942        
cufflinks 1.955        
cufflinks 0.865       Low
cufflinks 0.875       Low
cufflinks 2.576       High
cufflinks 8.164       High
cufflinks 1.382        
cufflinks 2.073        

0 Strain