Gene : Sobic.010G058600 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  599
Name:  ? Sobic.010G058600 Secondary Identifier:  ? PAC:37908900
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.010G058600 0.5kb upstream 0.5kb upstream 3355   true Chr10: 4602174-4605528 Sorghum bicolor
Sobic.010G058600 0.5kb upstream 0.5kb upstream 500   false Chr10: 4605029-4605528 Sorghum bicolor
Sobic.010G058600 0.5kb downstream 0.5kb downstream 3355   true Chr10: 4601674-4605028 Sorghum bicolor
Sobic.010G058600 0.5kb downstream 0.5kb downstream 500   false Chr10: 4601674-4602173 Sorghum bicolor
Sobic.010G058600 1.0kb upstream 1.0kb upstream 3855   true Chr10: 4602174-4606028 Sorghum bicolor
Sobic.010G058600 1.0kb upstream 1.0kb upstream 1000   false Chr10: 4605029-4606028 Sorghum bicolor
Sobic.010G058600 1.0kb downstream 1.0kb downstream 3855   true Chr10: 4601174-4605028 Sorghum bicolor
Sobic.010G058600 1.0kb downstream 1.0kb downstream 1000   false Chr10: 4601174-4602173 Sorghum bicolor
Sobic.010G058600 2.0kb upstream 2.0kb upstream 4855   true Chr10: 4602174-4607028 Sorghum bicolor
Sobic.010G058600 2.0kb upstream 2.0kb upstream 2000   false Chr10: 4605029-4607028 Sorghum bicolor
Sobic.010G058600 2.0kb downstream 2.0kb downstream 4855   true Chr10: 4600174-4605028 Sorghum bicolor
Sobic.010G058600 2.0kb downstream 2.0kb downstream 2000   false Chr10: 4600174-4602173 Sorghum bicolor
Sobic.010G058600 5.0kb upstream 5.0kb upstream 7855   true Chr10: 4602174-4610028 Sorghum bicolor
Sobic.010G058600 5.0kb upstream 5.0kb upstream 5000   false Chr10: 4605029-4610028 Sorghum bicolor
Sobic.010G058600 5.0kb downstream 5.0kb downstream 7855   true Chr10: 4597174-4605028 Sorghum bicolor
Sobic.010G058600 5.0kb downstream 5.0kb downstream 5000   false Chr10: 4597174-4602173 Sorghum bicolor
Sobic.010G058600 10.0kb upstream 10.0kb upstream 12855   true Chr10: 4602174-4615028 Sorghum bicolor
Sobic.010G058600 10.0kb upstream 10.0kb upstream 10000   false Chr10: 4605029-4615028 Sorghum bicolor
Sobic.010G058600 10.0kb downstream 10.0kb downstream 12855   true Chr10: 4592174-4605028 Sorghum bicolor
Sobic.010G058600 10.0kb downstream 10.0kb downstream 10000   false Chr10: 4592174-4602173 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122194106 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.163       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.009     Low  
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.007     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.13       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  

0 Strain